Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g02333 ATGTACGACCCCATGAACCAGATCGTCCCGGCCGAAGACAACGACGCCGACGCCTCTGATCAACACATCCATTACAGCTCCCACACCATAGAAGACGTTGGCGCCAATGTCGAAGACGTTTCCGCCGTCTCCCTCTACGTTCCACCCCCTGAAATCTCTGTCCAGGATTCTAGCCAGCTCACGCTCTCGTTTCGGGGCCAAGTCTATGTCTTCGATGCCGTTACACCTGATAAGGTCCAAGCAGTATTGTTGCTGTTGGGAGGAAGTGAACTTACTCCGGGCTCGCAATGTGCGGTGGAACTATCCCCTCAAAATCATACGGGTGCAGTAGAATTTCCTGCAAGATGCAGTCTACCACAGCGAGAGGCATCGTTGAATAGGTTCCGTCAGAAGAGGAAAGAGCGATGCTTTGATAAGAAAGTTAGATATAGTGTACGTCAAGAAGTTGCACTCAGGATGCATCGTAATAAGGGTCAATTTACTTCATCTAAGAAACAAGATGGAGCTAATAGTTGGGGTTCAGATCAAGAGTCAGGACAGGAGGCTGTTCAATCTGAAAACTCTTGTACACATTGTGGAACAAGTTCAAAATCCACTCCAATGATGCGAAGGGGGCCATCTGGTCCAAGGTCACTTTGCAATGCTTGCGGGCTTTTTTGGGCAAACAGGGGCACTTTGAGGGATCTTTCTAAGAGAAACCAAGAACACTCTCTTGTTCCACTTGAGCAGGTTGATGTGGGTAGTAATAATGACTTGGACTGTCGGAGTGTTATCCCGGCACAACATGACAATCATGTTAATGATAACAAAGCTTTGGTATCTGATCGTTGA 831 0.4765 MYDPMNQIVPAEDNDADASDQHIHYSSHTIEDVGANVEDVSAVSLYVPPPEISVQDSSQLTLSFRGQVYVFDAVTPDKVQAVLLLLGGSELTPGSQCAVELSPQNHTGAVEFPARCSLPQREASLNRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKKQDGANSWGSDQESGQEAVQSENSCTHCGTSSKSTPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRNQEHSLVPLEQVDVGSNNDLDCRSVIPAQHDNHVNDNKALVSDR* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g02333 276 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 184 235 - -
Phac9g02333 276 CDD ZnF_GATA 188 234 IPR000679 GO:0006355|GO:0043565
Phac9g02333 276 Gene3D - 180 237 IPR013088 GO:0006355|GO:0008270
Phac9g02333 276 MobiDBLite consensus disorder prediction 154 207 - -
Phac9g02333 276 ProSiteProfiles GATA-type zinc finger domain profile. 183 242 IPR000679 GO:0006355|GO:0043565
Phac9g02333 276 Pfam tify domain 57 87 IPR010399 -
Phac9g02333 276 SMART tify_2 53 88 IPR010399 -
Phac9g02333 276 PANTHER GATA TRANSCRIPTION FACTOR 28 20 243 IPR045280 GO:0006355
Phac9g02333 276 Pfam GATA zinc finger 189 225 IPR000679 GO:0006355|GO:0043565
Phac9g02333 276 ProSitePatterns GATA-type zinc finger domain. 189 216 IPR000679 GO:0006355|GO:0043565
Phac9g02333 276 ProSiteProfiles CCT domain profile. 121 163 IPR010402 GO:0005515
Phac9g02333 276 Pfam CCT motif 121 163 IPR010402 GO:0005515
Phac9g02333 276 SMART GATA_3 183 236 IPR000679 GO:0006355|GO:0043565
Phac9g02333 276 ProSiteProfiles Tify domain profile. 53 88 IPR010399 -
Phac9g02333 276 MobiDBLite consensus disorder prediction 162 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g02333 Phac-Chr9 22165895 22170362 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g02333 2 244 Tify Gene Family AT4G24470 59.016 2.42e-90 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Phac9g02333 CCT 1.4e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g02333 - - pvu:PHAVU_009G035400g 553.903