Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g02188 ATGGAATATGGAGCCTTGGTGCAGAATGGTGCGTGTGGGAGCTTCTCAGATATTTTTGCCCCAGAAACGGACTTTATGGATGAGCTGTTTGTAGAAGGATGCTGGGTGGAAACAAGGGTTGGATGTGGAGGATCGTATCTTAATTGTGGCACGGAGCCTTCCAAGTCAAACAGCAGCATGGAAATAATATTTGAGGAAGAATCAGAGGCAGAAAGTTTGATGGTGGGGAAGAGATGGTGGATTGGACCTAGGGCGAATAATCCAGGGCCATCTTCCTCTGTGAAGGAGAGATTAGTGGTTGCGGTTGGGTACTTGAAAGAATACGCCAAGAACTCCAATATGGTGATTCAGGTATGGGTGCCCGCACGGAGAGGATGTGCAGTAGGGGTTCATCAGGACTACCCATACACCCTTGACTATACTAATATTACTAATAATAACAATGGGGATGCAACAAGAGTCTTTCAGTTTCAGGAGGAGTGGCTTTCTGATCACTGGACTCCCAACATTCGCTTCCTCAGAACTCACGACTACTCCCGCGTTCAGCAGTACGATCTACGTGCTGGATCTCTGTCCCTTCCCGTCTTTCAGAGAGGCAGTGGAATTTGTCTCGGTGTTGTCGAGATTCTCATGCCCAACAACGTCAACCCGGACCTTCACAACCTTCAGGGTGTTGATTTTAGGAGCTATTCTCTTCAGAACTTCATTCCACCAGCCATGACCGTGAAGGGTTTTGACGAGTTATACCAAGGTGCATTAAATGAGATAGTAGAAGTTTTGACGTGTGTGTGCAAGGCGCATGAGTTGCCTTTAGCTTTGACATGGGCTCCCTGCATCCAACAAGGAAAGAGTGGATGCGGGCATTCAAACGAAGAGAATTATGTGTCAACTGTGGATCCAGCAAGCTTTGTGGCAGATGTAGATGTGTTGGGATTCCTGGAAGCGTGCTCTGAGTGCCACCTTTTGGGGGGACAAGGAGTGGTTGGAACAGCTTTCACAACCGCCAAGCCTTGCTTTGCAAACGACATAACTGCCTTCACCAAGGCTGAATATCCTCTCGCACATCATGCAAACATGTTCGGCTTGCATGCTGCTGTGGCCATTCCTCTCCGGAGTGTCTCCGCTGATTTTGTCTTGGAGTTTTTCCTGCCAAAGGATTGCCATGACCCCCAAGACCAGAAGCAGATGCTCAACTCCTTGTCTATGCTAGTGCAGCAAGCTTGCCGGAGTTTGCACGTTGTAATGGATAAGGAGGAGGAGGAGGAATTGGTGGTACACCATCATCATCATCCTCATGATAGCAAAGAAATGGAATCATCATCCTGGATTGCACATATGATGGAGGCCCAACAGAAGGGGAAAGGTGTTTCGGTGTCTCTGGAATACCTCCAAGAGCCAAAACAAGAGTTCAAAGTGACAACCAACTGCAGTGAACAGGTATTCTCGGAATTGGAAGGAACAGGCAGTGTTGGTGTTGGTGTTGGTGGGCGCAGGGGTGGCAGGAAATCAGGCGACAAGAGGCGAACCAAGGCAGAGAAGACTATAAGCTTGCCGGTTCTTAGACAATACTTTGCAGGAAGCCTAAAAGACGCTGCCAAGAGCATTGGGGTATGTCCTACCACTCTAAAAAGAATATGCAGACAACATGGGATTACAAGGTGGCCTTCAAGGAAAATTAAGAAGGTAGGCCACTCCTTAAGGAAACTTCAACTTGTGATCGATTCCGTCCAGGGTGCCGAAGGTGCCATTCAAATTGGCTCCTTCTATACCAGTTTTCCAGAGTTGAGCTCTGCCAATGGTGTTTCAGAATCATCCAAGATCAACAACGATAATTCTAAGTTTTATTCTGAAAATGGGTTGCTTAGTAACCAAGGAGTTACCACCACTACTTCCACTTCTCCTTTCAAATCCCCAACCTCGTCTTGCAGTCAGACTTGTAACCCCACTTCAAACCAATCAACCACTATCATCAACAACAACAATAACAACGATGACATTATTCTGATGTCAGAGAACCAATCACTAATTGGCGCACCAATCCAAGTCCAAGGGGAAGCAAGGCATTTCACCCATCATCCTCCCATTCCCATTCCCATTCCCATTCAAAGCCTGGATGCTCTACCTCCCCTGCCCCAAACTAGCAGTGCCTGGAACACGGGCAGTGGTAGTTTTAGGGTGAAAGCTACTTTTGGAGATGAAAAAATCCGTTTCAGCTTGCAACCAAATTGGGGATTCAGAGACTTGCAGATGGAGATTGCAAGACGTTTCAATCTGAACGAGATTAGCAACATTCAGCTAAAGTATTTGGACGATGCTCAAGAGTGGGTTCTTTTAACATGCGATGCAGATCTTGAGGAGTGTAAAGACATTAATAGATCATCTCAGAGCCGCACAGTTAGACTATTCCTCTTTCATGCTTCGCCACTTAGTCATTCAACAAATGCATTTGGCGGCACCAGCCCCACTTAA 2469 0.469 MEYGALVQNGACGSFSDIFAPETDFMDELFVEGCWVETRVGCGGSYLNCGTEPSKSNSSMEIIFEEESEAESLMVGKRWWIGPRANNPGPSSSVKERLVVAVGYLKEYAKNSNMVIQVWVPARRGCAVGVHQDYPYTLDYTNITNNNNGDATRVFQFQEEWLSDHWTPNIRFLRTHDYSRVQQYDLRAGSLSLPVFQRGSGICLGVVEILMPNNVNPDLHNLQGVDFRSYSLQNFIPPAMTVKGFDELYQGALNEIVEVLTCVCKAHELPLALTWAPCIQQGKSGCGHSNEENYVSTVDPASFVADVDVLGFLEACSECHLLGGQGVVGTAFTTAKPCFANDITAFTKAEYPLAHHANMFGLHAAVAIPLRSVSADFVLEFFLPKDCHDPQDQKQMLNSLSMLVQQACRSLHVVMDKEEEEELVVHHHHHPHDSKEMESSSWIAHMMEAQQKGKGVSVSLEYLQEPKQEFKVTTNCSEQVFSELEGTGSVGVGVGGRRGGRKSGDKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLRKLQLVIDSVQGAEGAIQIGSFYTSFPELSSANGVSESSKINNDNSKFYSENGLLSNQGVTTTTSTSPFKSPTSSCSQTCNPTSNQSTTIINNNNNNDDIILMSENQSLIGAPIQVQGEARHFTHHPPIPIPIPIQSLDALPPLPQTSSAWNTGSGSFRVKATFGDEKIRFSLQPNWGFRDLQMEIARRFNLNEISNIQLKYLDDAQEWVLLTCDADLEECKDINRSSQSRTVRLFLFHASPLSHSTNAFGGTSPT* 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g02188 822 MobiDBLite consensus disorder prediction 627 656 - -
Phac9g02188 822 Pfam PB1 domain 724 805 IPR000270 GO:0005515
Phac9g02188 822 PANTHER PROTEIN NLP8 71 807 IPR045012 GO:0003700
Phac9g02188 822 CDD PB1_NLP 724 805 IPR034891 -
Phac9g02188 822 SUPERFAMILY CAD & PB1 domains 713 808 - -
Phac9g02188 822 Gene3D - 724 806 - -
Phac9g02188 822 Pfam RWP-RK domain 515 562 IPR003035 -
Phac9g02188 822 MobiDBLite consensus disorder prediction 491 511 - -
Phac9g02188 822 SMART PB1_new 723 806 IPR000270 GO:0005515
Phac9g02188 822 ProSiteProfiles RWP-RK domain profile. 501 582 IPR003035 -
Phac9g02188 822 ProSiteProfiles PB1 domain profile. 723 806 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g02188 Phac-Chr9 20920368 20923149 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g02188 56 807 NLP Transcription Factor Family AT4G35270 44.235 0.0 607
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Phac9g02188 PB1 1.2e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g02188 - - pvu:PHAVU_009G115800g 1523.06