Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g02160 ATGTTAACACAAACTTCTCTCCTTAGTTCAGTTGAAGCTGGTCTATGTTATGTATCTGATGATGGGAAAGATGTTCTATGTGACCGGATGCCTAGTGGTGAAACTTGGCAGGTGTGTCTCAAATGCAATAGGTACCCTCTTGACTGGTGTAGAAAAGCTGAACCAGTGGAGGAAGATAGAAGTCATGCTGATGATTCTTACTGCTCAAGCTTTGGTCAGACATCAACTGCTAGTATAATGACGGAAAATACTACACCTCAACCTAAGATGGTATACAGGAGAAAGAAGCTTCGTAGGGACTCAAATTTCAAGCTAGAGCCAACTAATATGCAGGCAAGTGCAAACTACCCTTCAGCCATAAGCTCTGCTGCACATTTATCATCAGCTGAGGAACAGCCAGCTGGTTTTCGGGTAAATCATGAAATTGAAGTGGTTAAAAATCCTACTACACCTTCAGTCTTGTTTGATGGAGTAGCCAAAGATAGCACCCATAAAAACTTAGGTATTAGCAGTGTAAATGATAGTTGCTCCTCTTCAAAGCCAGATATGGAAACTGAAATGGATGGAAATGGTGAATGCTCCTCCTCCAGTGTAATAGTCATGGATTCGACTAGGGAAGAAGTGACGGAAAAGGATTTCTGCATTAATACTTTAAGAACCCATGGACTTCTTAGAGAATATTCTCCTGAAGATAATGTGGCTTCTGGGGAAGATGCTGCCATCACTGGTAATAACTGCTGTTCCAGGTCGTGCAAAATATGTGATCGTTTAGACAGTTCACTGAACATGCTTTTATGTGATCATTGTGAAGATGCATATCATCCGTCTTGCTACAATCCACGTTTGAAAAAATTGCCAATTGATGAGTGGTTTTGTCATTCATGTCTGAAGAAAAGGCAGAAAAATCTCAAGGAACCAAGTATCCACAATGAATTGGGCAAATGTAGAGCTACCTCAGTTAAGGGTGAAGCAAATCCCATACTTTTGATGTTGAGAGACACTGCACCACATGCAACTGCTGTGCGGGTTGGTAAAGGATTTCAAGCAGAAGTTCTTGACTGGTCAGGTCCGATAAAAAGGTAA 1083 0.4127 MLTQTSLLSSVEAGLCYVSDDGKDVLCDRMPSGETWQVCLKCNRYPLDWCRKAEPVEEDRSHADDSYCSSFGQTSTASIMTENTTPQPKMVYRRKKLRRDSNFKLEPTNMQASANYPSAISSAAHLSSAEEQPAGFRVNHEIEVVKNPTTPSVLFDGVAKDSTHKNLGISSVNDSCSSSKPDMETEMDGNGECSSSSVIVMDSTREEVTEKDFCINTLRTHGLLREYSPEDNVASGEDAAITGNNCCSRSCKICDRLDSSLNMLLCDHCEDAYHPSCYNPRLKKLPIDEWFCHSCLKKRQKNLKEPSIHNELGKCRATSVKGEANPILLMLRDTAPHATAVRVGKGFQAEVLDWSGPIKR* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g02160 360 PANTHER TRANSCRIPTION INTERMEDIARY FACTOR 208 301 - -
Phac9g02160 360 MobiDBLite consensus disorder prediction 170 195 - -
Phac9g02160 360 Pfam PHD-finger 251 297 IPR019787 -
Phac9g02160 360 SUPERFAMILY FYVE/PHD zinc finger 241 300 IPR011011 -
Phac9g02160 360 ProSitePatterns Zinc finger PHD-type signature. 251 295 IPR019786 -
Phac9g02160 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 169 309 IPR013083 -
Phac9g02160 360 ProSiteProfiles Zinc finger PHD-type profile. 248 298 IPR019787 -
Phac9g02160 360 SMART PHD_3 250 296 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g02160 Phac-Chr9 20442117 20443577 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g02160 251 296 C2H2 Transcription Factor Family AT3G01460 41.304 2.38e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phac9g02160 PHD 3.1e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g02160 - - gmx:100813057 607.06