Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g02147 ATGGTGGTTGGGAGAGTTGTTGTTCCGAATCCTCCCTCCAATCTGTTCCACAATCCTTCTTCTGCTGCCACGCTCATACCTCTACACACTCGTCTTCTCTCTTTCTCCGCTTCCGCCGCCGCCTCCTCCTCCTCCTCCTCCTCCTCCGCCAATCGCACTCGCCACACTCCCACTACCAACAACGACTCTCCCTTCTCAACTTTCGGAAGACTCAAGGATCAGAAACCGAAGACTGTGCTTCACAGAAGCAAGGACCGAAGACGCGAAGAAGAAGAAGAAGACGATAACGATGATGATGAGGACTACAACGACAATCACGCAGCTCCCAGACGCAGACCTTCTCAGTCACGGTCTCGGTCAGGTGGACGAGAACGAGGAGGATGGGATATCATTCCCAGGTTTCCCTCACAAGCCAAAACCACCACTGACACCAACTTCTTCAGTCTCAAGTCATTTAAAGAAGTTGGGTGCGCTGACTACATCCTTCAATCCCTCCAAAAAATCTTCTTAACGCGCCCTTCCCATGTGCAGGCCATGGCTTTTGCTCCTGTTCTCAGCGGAAAGACTTGTGTCATAGCTGACCAAAGTGGTTCTGGAAAGACATTAGCTTATCTTGTACCAATCATTCAGCGTGTTAGACAAGAAGAACTTGAAGGACGTAGTCAATCCTCTTCACAAGCTCCTAGAGTCCTTGTACTCGCACCCACTGCGGAGTTAGCTTCTCAGGTCTTAGATAATTGTCGATCCTTGTCAAAATCTGGGGTTCCGTTCAAATCTATGGTTGTCACGGGAGGTTTTCGACAAAGGACTCAACTAGAAAGTTTACAGCAGGGAGTTGATGTCTTAATAGCTACTCCTGGCCGTTTTTTGTACCTCATGAATGAAGGCTTCTTGCAGTTAACAAATCTAAGATGTGCTGTGTTGGATGAGGTAGATATTCTCTTTGGTGATGAGGACTTTGAAGTGGCTCTTCAACGCCTGATCAGTTCTTCACCGGTTGACACACAGTATCTATTTGTGACTGCAACTTTACCAAAAAATGTTTTCACCAAATTGGTTGAAGTTTTTCCGGATTGCGAAATGATTATGGGACCTGGTATGCATCGCATAAGTTCTCGCCTTGAGGAGATTCTAGTAGATTGCAGTGGAGAGGATGGACAAGAAAAAACTCCTGATACAGCATTTTTGAACAAGAAAACCGCACTTGTGCAGCTTGTGGAGGAAAGTCCTGTTCCAAGAACTATTGTGTTCTGCAACAAGATTGAAACATGCAGAAAAGTTGAAAATTCATTAAAGCGTTTTGATAGAAAAGGAAATCGCATGCAAGTTCTACCCTTCCATGCTGCCATGACACAAGAATCACGGCTTGCTAGCATGGAAGAGTTTACACGTTCTCCATCAAAAGGAGTCTCCCAGTTTATGGTTTGCACTGACAGGGCTTCACGGGGAATAGACTTTGCAGGAGTGGATCATGTCATACTCTTTGACTTCCCGCGTGATCCAAGTGAATATGTACGGCGTGTTGGAAGAACAGCCAGAGGGGCGAAGGGAGTAGGAAAGGCATTTATTTTTGTGGTTGGCAAGCAAGTATCCCTTGCAAGCAAAATAATGGAAAGAAGTCGGAAGGGTCACCCGCTACATGATGTGCCTTCGCCATATTAG 1662 0.4639 MVVGRVVVPNPPSNLFHNPSSAATLIPLHTRLLSFSASAAASSSSSSSSANRTRHTPTTNNDSPFSTFGRLKDQKPKTVLHRSKDRRREEEEEDDNDDDEDYNDNHAAPRRRPSQSRSRSGGRERGGWDIIPRFPSQAKTTTDTNFFSLKSFKEVGCADYILQSLQKIFLTRPSHVQAMAFAPVLSGKTCVIADQSGSGKTLAYLVPIIQRVRQEELEGRSQSSSQAPRVLVLAPTAELASQVLDNCRSLSKSGVPFKSMVVTGGFRQRTQLESLQQGVDVLIATPGRFLYLMNEGFLQLTNLRCAVLDEVDILFGDEDFEVALQRLISSSPVDTQYLFVTATLPKNVFTKLVEVFPDCEMIMGPGMHRISSRLEEILVDCSGEDGQEKTPDTAFLNKKTALVQLVEESPVPRTIVFCNKIETCRKVENSLKRFDRKGNRMQVLPFHAAMTQESRLASMEEFTRSPSKGVSQFMVCTDRASRGIDFAGVDHVILFDFPRDPSEYVRRVGRTARGAKGVGKAFIFVVGKQVSLASKIMERSRKGHPLHDVPSPY* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g02147 553 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 43 550 - -
Phac9g02147 553 Gene3D - 395 548 IPR027417 -
Phac9g02147 553 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 526 IPR027417 -
Phac9g02147 553 Pfam DEAD/DEAH box helicase 175 348 IPR011545 GO:0003676|GO:0005524
Phac9g02147 553 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 181 362 IPR014001 -
Phac9g02147 553 MobiDBLite consensus disorder prediction 74 90 - -
Phac9g02147 553 SMART helicmild6 425 515 IPR001650 -
Phac9g02147 553 SMART ultradead3 169 377 IPR014001 -
Phac9g02147 553 Pfam Helicase conserved C-terminal domain 398 514 IPR001650 -
Phac9g02147 553 MobiDBLite consensus disorder prediction 41 135 - -
Phac9g02147 553 Gene3D - 129 361 IPR027417 -
Phac9g02147 553 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 401 553 IPR001650 -
Phac9g02147 553 MobiDBLite consensus disorder prediction 103 126 - -
Phac9g02147 553 CDD DEADc 161 348 - -
Phac9g02147 553 CDD SF2_C_DEAD 374 525 - -
Phac9g02147 553 MobiDBLite consensus disorder prediction 41 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g02147 Phac-Chr9 20370889 20375821 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g02147 149 523 Eukaryotic Initiation Factors Gene Family AT3G19760 27.660 1.99e-30 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g02147 K13179 - gmx:100784377 806.979