Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g02054 ATGGATGCCGACGATGACGAAGCTCCACTCCAACCACACTCTGATGCACAATGCCACACCGACGCCTACGCAGCCGTGGGAGACCCTGAGCCCGATACCTTAGGGGAGCTGAGCGCCGCCGCTGCTCAAGAGGTTGTCGCTGTTGAACCCGATGCGACGATGGAGACGGCGGTTGAATCCGACGCGGGCGTTGGAACGCATGCGATGGACGAGGTAATTGAGGAGAAGGGGACTGAGGTAACCGATGTAGACGACGTGGCTTTGGAGATGGAGAACGTGGAAGAGGAAGCGAATTTGACAATTGATGCGGAAGAGGACGAAATTGGGGACGAAGACGCAAATGAAGACGCTTTGATGGAAGAAGAAGAAGATGAACAGCAACAAGGAGAGGAGGAGGAAGAGGAGGAAGAAAAACAGCAACAAGGAGTGGAGGAGGAAGAAGAGGAACAGCAACAAGCTGAAGAGGATGAGGAAGAAGAAGAAGAGGATGAAGGAGAAGAAGAACAGCAACAAGGAGAAGAAGAAGATGCTGATGCTGGAATGACAAAAACAGAAGATACAGAGGAGAAGGAGGAGAAGAGTGTGAGTGGTGGAAAGAGGAAGCGTGGGGCTGGAAAGAATGCTAAAACTACAGGGAGAGTTGCGTCCAGGAAAAAGACGGAAGAAGATGTTTGTTTCATTTGCTTCGATGGGGGTGATCTTGTGCTTTGTGACCGCAGGGGATGTCCCAAGGCATACCATCCTTCCTGCGTTAATCGTGATGAGGCATTCTTTCGAGCCAAGGGAAAGTGGAATTGCGGTTGGCATCTTTGCAGCAACTGTGAGAGGAATGCAAACTATATGTGCTATACATGTACGTTTTCTTTGTGCAAGGGATGCATCAAAGATGCTGTTATCTTATGTGTCAGGGGAAACAAGGGATTTTGTGAGACATGCATGAGAACCGTAATGTTGATTGAACAGAATGTGCAGGGGAGCAATGTGGGACAGATAGATTTTGATGACAAAAACAGCTGGGAGTATCTCTTCAAGGACTACTACATAGATCTAAAAGAAAAACTGTCTCTAACATTTGATGAAATCACTCAAGCTAGAAACCCTTGGAAGGGATCTGACATGCTTCATTCTAAAGAGGAATCACCGGATGAACTTTTTGATGCCCCTAACGATAGAGGATCAGATTCTGATAGCTCCTATGAAAATGATTCAAATCGTTCTAAAAGAAGAAAGGCAAAGAAACGGGGTAAGTCCCGTTCCAAAGAAGGAAACTTGCATGGTGCAGTCACGGTGTCTGGTGCTGATGGGCCATCTGGAAATGACAGCGCGGAGTGGGCTTCAAAAGAGCTTCTAGAGTTTGTTATGCACATGAGAAATGGAGATAAGTCTGTATTATCTCAGTTTGATGTGCAGGCTCTTTTGCTTGAGTATATTAAAAGAAATAAGCTTCGAGATCCGCGCCGAAAAAGTCAGATTATATGTGATGCAAGACTTCAAAATCTTTTTGGTAAACCAAGAGTGGGACATTTTGAGATGTTAAAGCTTCTTGAGTCCCATTTCCTTCTAAAAGAGGATTCTCAGGCCGAAGATATGCAGGGAAGTGTTGTTGACACAGAAGTTAGTCATTTGGAAGGAGATGGGAATCCCAATTCGTATATGAAAGCTGGCAAAGATAAGAGGCGTAAAAATCGCAAAAAGGGTGATGAGAGAGGACTTCAAACTAACGTTGATGATTATGCAGCTATTGATAACCATAATATTACTTTAATTTATCTACGACGGAATTTGGTTGAAGATCTACTTGAAGATACAGAGAAGTTTCATGATAAAGTTGTTGGTTCTTTTGTGAGAATAAGAATTTCTGGTAGTGGTCAGAAGCAAGACTTGTATAGGCTGGTTCAGGTTGTAGGTACATGCAAAGCAGCAGAGCCATATAAAGTTGGTAAAAGGATGACAGATACGTTGCTAGAAATCTTAAATTTAAACAAGACAGAGATTGTATCAATTGATATTATCTCAAATCAGGAGTTCACAGAGGATGAATGCAAACGTCTACGCCAAAGCATAAAGTGTGGTCTCATAAATCGTCTGACTGTGGGTGACATTCAGGACAAAGCATTGGTGCTTCAGGCTGTTAGAGTAAAAGATTGGCTAGAGACTGAGATAGTGCGGCTGAGTCATCTCCGTGATAGAGCTAGTGAGAAAGGACGCCGAAAAGAGCTCAGAGAATGTGTAGAGAAATTGCAGCTTTTGAAGACACCTGAAGAACGTCAACGTAGGTTGGAGGAAATTCCAGAGATACATGTGGATCCGAACATGGATCCCAGTTATGAGTCTGAAGAAGATGAAGATGAAATGGATGATAAAAGACGAGAAAACTACATGAGACCTAGAGGGTCTACTTCCTTTGGAAGGAGGGGGAGAGATATTGTTTCTCCTAGAAGTGTTTCTGTTTCAAATGATTCTTGGAGTGGAACGAGGAATTATTCCAATGCGAATCAGGAACTCAGCAGAAATTTGTCCAGTAAGGGATTTTCAGTCAAAGGTGAAAATGCTTCTAATGTTAATGAGGTACTGAGTGATACTCATTTGCACCCGGGAAGAGATAGGGAATCACAACTATCTAATAGCTGGGAGAGGCAAAAACTCTCTTCAAGCTTGGAAAGTGGTGCTAAAAGTAACCAATCATTGGTAACATCTGATTCTTTCTCTACTGCTGTATTGGAAGCTTCTGCAACACCATCTTCTGCCGGAATAACACCTTCAGCTTTGAAAATTAATGAAACTGAAAAGACATGGCACTACCAGGATCCTTCCGGAAAAGTTCAGGGACCATTTTCTATGGTACAGTTACGCAAATGGAGTAACACAGGATACTTTCCTGCTGATTTGAGGATTTGGAGAACCACTGAGAAGCAAGATGATTCTATACTCGTAACAGATGCCTTGGCAGGGAATTTTTCTAAAGAACCATCGATGGTGGATAAGGCTCAAAAGGTGCATGATTTACATTACCCAGCCTCGTACTCTAGGAAGTCCGCACAAGGTACGGAAGGTCAAGTTGGAGAAAGACCATCATTTGATCAAAATAGTGGATCTTTAAATTCACATAGTACACTGGGTTCTCCGGGACAAACGACGGGTGGAAGTTGGAGATCTAAAGATAATATGAATTCTTTAGCAAATAGAACATCTCCATTGGCAGTTGAGGTCCCCAAGAACCCTGCAAATGGCTGGGGTTCTGATGCTGGTAGTAGAAATGAAGCAACAAATCTTCCTTCACCTACACCTCAGACTACCCCTGGTGTGACTAAAGGGCAGGCTTTTGAAAATAAATGGTCACCAACACCTGTCCCGTTGCCTGGGTCTCTCATAGGAAATTCATTCCCAGGCAATCATGGAGGTTTGCAGGCCTCTTTGGTAGTGCATGCAGAGCATGCTGTGCAGAATCCAGAAAAAGGCTCTTCACAACCTGGTATTAGTTCAGCATCTATAGATAATTCTAAGTTACATCCTCAACCTGCAGCAGTGGCACCTGTTCTGCCTTCAGGGGTTGATCTCAAAATGGCAGGTACAAATATGCAAAACCAGGTTGTGCGTAGCCACAACTCTCATGCTGAAGCTCAAGGGTGGGGTTCTGCTGGGGTTCCAAAGCCAGAACTGCAGGCTTGGGGAGGTGTATCATCCCAACCAAATCCTGCTGCTATGCCTGCCCAGCCAGCATCCCATGGCCCCTGGGTTGATGCCTCATCTGTGCAGAACACTGCCTCGTTTAACACTGGGAATCCATCTCCCAGTTTACCCACACCTGGATTTCTGGGCATGAATACCTCCGAGCCTTGGAGACCCCCAGCTTCTAGTAGTCAGCCAAACATCACAGCTCCTTCTCCAGCTCCACCCAATATGCCTTGGGGAATGGGCATGCCAGGAAATCAGAATATGAACTGGGGTGGTGTTGTACCTGCCAATATGAACGCAACCTGGATGCCTGCGCAGGTGCCAGCACCAGGAAATTCAAATCCAGGATGGGCTGCTCCTAGTCAGGGGCTACCTCCTAATCAGGGGCTACCTCCAGTGAATGCAGTTGGCTGGGTTGGACCTGGTCAAGGCCGTTCCCATGTAAATGTGAATGCAGGTTGGGTTGGATCTGGTCAGGGTCTAGCACCTGGAAATGCCAATCCTGTTTGGGTTCCACCAGCTGGGAATCCAGGCATGTGGGGAAGTGAGCAAAGTCATAATGGAGACAGGTTCCCAAACCAAGGGGATCGTGGTACACACGGTAGAGATTCTGGTTATGGTGGTAAATCTTGGAACAGGCAGTCATCATTTGGCAGAGGAGCTCCTTCCAGGCCTCCTTTTGGGGGACAACGAGGAGTTTGCAAGTATCATGAGAGTGGACATTGCAGGAAGGGGGATTCTTGTGATTTTCTACACACTTAG 4437 0.455 MDADDDEAPLQPHSDAQCHTDAYAAVGDPEPDTLGELSAAAAQEVVAVEPDATMETAVESDAGVGTHAMDEVIEEKGTEVTDVDDVALEMENVEEEANLTIDAEEDEIGDEDANEDALMEEEEDEQQQGEEEEEEEEKQQQGVEEEEEEQQQAEEDEEEEEEDEGEEEQQQGEEEDADAGMTKTEDTEEKEEKSVSGGKRKRGAGKNAKTTGRVASRKKTEEDVCFICFDGGDLVLCDRRGCPKAYHPSCVNRDEAFFRAKGKWNCGWHLCSNCERNANYMCYTCTFSLCKGCIKDAVILCVRGNKGFCETCMRTVMLIEQNVQGSNVGQIDFDDKNSWEYLFKDYYIDLKEKLSLTFDEITQARNPWKGSDMLHSKEESPDELFDAPNDRGSDSDSSYENDSNRSKRRKAKKRGKSRSKEGNLHGAVTVSGADGPSGNDSAEWASKELLEFVMHMRNGDKSVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDARLQNLFGKPRVGHFEMLKLLESHFLLKEDSQAEDMQGSVVDTEVSHLEGDGNPNSYMKAGKDKRRKNRKKGDERGLQTNVDDYAAIDNHNITLIYLRRNLVEDLLEDTEKFHDKVVGSFVRIRISGSGQKQDLYRLVQVVGTCKAAEPYKVGKRMTDTLLEILNLNKTEIVSIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQDKALVLQAVRVKDWLETEIVRLSHLRDRASEKGRRKELRECVEKLQLLKTPEERQRRLEEIPEIHVDPNMDPSYESEEDEDEMDDKRRENYMRPRGSTSFGRRGRDIVSPRSVSVSNDSWSGTRNYSNANQELSRNLSSKGFSVKGENASNVNEVLSDTHLHPGRDRESQLSNSWERQKLSSSLESGAKSNQSLVTSDSFSTAVLEASATPSSAGITPSALKINETEKTWHYQDPSGKVQGPFSMVQLRKWSNTGYFPADLRIWRTTEKQDDSILVTDALAGNFSKEPSMVDKAQKVHDLHYPASYSRKSAQGTEGQVGERPSFDQNSGSLNSHSTLGSPGQTTGGSWRSKDNMNSLANRTSPLAVEVPKNPANGWGSDAGSRNEATNLPSPTPQTTPGVTKGQAFENKWSPTPVPLPGSLIGNSFPGNHGGLQASLVVHAEHAVQNPEKGSSQPGISSASIDNSKLHPQPAAVAPVLPSGVDLKMAGTNMQNQVVRSHNSHAEAQGWGSAGVPKPELQAWGGVSSQPNPAAMPAQPASHGPWVDASSVQNTASFNTGNPSPSLPTPGFLGMNTSEPWRPPASSSQPNITAPSPAPPNMPWGMGMPGNQNMNWGGVVPANMNATWMPAQVPAPGNSNPGWAAPSQGLPPNQGLPPVNAVGWVGPGQGRSHVNVNAGWVGSGQGLAPGNANPVWVPPAGNPGMWGSEQSHNGDRFPNQGDRGTHGRDSGYGGKSWNRQSSFGRGAPSRPPFGGQRGVCKYHESGHCRKGDSCDFLHT* 1479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g02054 1478 FunFam Zinc finger CCCH domain-containing protein 19 214 314 - -
Phac9g02054 1478 MobiDBLite consensus disorder prediction 1009 1064 - -
Phac9g02054 1478 CDD GYF 929 984 IPR003169 GO:0005515
Phac9g02054 1478 Coils Coil 87 107 - -
Phac9g02054 1478 SUPERFAMILY SWIB/MDM2 domain 442 520 IPR036885 -
Phac9g02054 1478 PANTHER UNCHARACTERIZED 119 1478 - -
Phac9g02054 1478 SUPERFAMILY Plus3-like 581 709 IPR036128 GO:0003677
Phac9g02054 1478 MobiDBLite consensus disorder prediction 371 406 - -
Phac9g02054 1478 ProSiteProfiles Zinc finger PHD-type profile. 222 288 IPR019787 -
Phac9g02054 1478 CDD Bbox1 270 296 - -
Phac9g02054 1478 FunFam Zinc finger CCCH domain-containing protein 19 581 710 - -
Phac9g02054 1478 MobiDBLite consensus disorder prediction 756 829 - -
Phac9g02054 1478 Pfam Plus-3 domain 585 688 IPR004343 GO:0003677
Phac9g02054 1478 Gene3D - 582 710 IPR036128 GO:0003677
Phac9g02054 1478 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 211 316 IPR013083 -
Phac9g02054 1478 Gene3D SWIB/MDM2 domain 434 529 IPR036885 -
Phac9g02054 1478 Pfam SWIB/MDM2 domain 446 519 IPR003121 -
Phac9g02054 1478 MobiDBLite consensus disorder prediction 538 571 - -
Phac9g02054 1478 SMART swib_2 453 524 IPR019835 -
Phac9g02054 1478 MobiDBLite consensus disorder prediction 876 894 - -
Phac9g02054 1478 ProSiteProfiles Plus3 domain profile. 580 713 IPR004343 GO:0003677
Phac9g02054 1478 ProSiteProfiles Zinc finger C3H1-type profile. 1453 1478 IPR000571 GO:0046872
Phac9g02054 1478 SUPERFAMILY GYF domain 922 982 IPR035445 -
Phac9g02054 1478 Coils Coil 115 175 - -
Phac9g02054 1478 MobiDBLite consensus disorder prediction 92 214 - -
Phac9g02054 1478 SMART rtf1 580 690 IPR004343 GO:0003677
Phac9g02054 1478 MobiDBLite consensus disorder prediction 1009 1113 - -
Phac9g02054 1478 CDD PHD5_NSD 224 269 - -
Phac9g02054 1478 ProSitePatterns Zinc finger PHD-type signature. 225 285 IPR019786 -
Phac9g02054 1478 ProSiteProfiles SWIB/MDM2 domain profile. 438 521 IPR003121 -
Phac9g02054 1478 MobiDBLite consensus disorder prediction 861 875 - -
Phac9g02054 1478 MobiDBLite consensus disorder prediction 856 894 - -
Phac9g02054 1478 ProSiteProfiles GYF domain profile. 929 983 IPR003169 GO:0005515
Phac9g02054 1478 Pfam GYF domain 932 972 IPR003169 GO:0005515
Phac9g02054 1478 MobiDBLite consensus disorder prediction 369 440 - -
Phac9g02054 1478 FunFam Zinc finger CCCH domain-containing protein 19 931 988 - -
Phac9g02054 1478 SUPERFAMILY CCCH zinc finger 1456 1477 IPR036855 GO:0046872
Phac9g02054 1478 SMART PHD_3 224 270 IPR001965 -
Phac9g02054 1478 SMART gyf_5 930 985 IPR003169 GO:0005515
Phac9g02054 1478 MobiDBLite consensus disorder prediction 1149 1168 - -
Phac9g02054 1478 SUPERFAMILY FYVE/PHD zinc finger 220 276 IPR011011 -
Phac9g02054 1478 MobiDBLite consensus disorder prediction 92 182 - -
Phac9g02054 1478 Gene3D - 931 989 IPR035445 -
Phac9g02054 1478 MobiDBLite consensus disorder prediction 183 199 - -
Phac9g02054 1478 MobiDBLite consensus disorder prediction 756 774 - -
Phac9g02054 1478 MobiDBLite consensus disorder prediction 1403 1460 - -
Phac9g02054 1478 MobiDBLite consensus disorder prediction 1275 1298 - -
Phac9g02054 1478 MobiDBLite consensus disorder prediction 1079 1110 - -
Phac9g02054 1478 MobiDBLite consensus disorder prediction 1147 1170 - -
Phac9g02054 1478 CDD SWIB-MDM2_like 444 519 - -
Phac9g02054 1478 FunFam Zinc finger CCCH domain-containing protein 19 431 526 - -
Phac9g02054 1478 MobiDBLite consensus disorder prediction 812 829 - -
Phac9g02054 1478 MobiDBLite consensus disorder prediction 1225 1244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g02054 Phac-Chr9 19220721 19234899 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g02054 222 295 PHD Transcription Factor Family AT4G14920 39.189 1.28e-06 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Phac9g02054 Plus-3 1.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g02054 - - gmx:100815079 2317.73