Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phac9g02041 | ATGAAGATCCAGTGTGACGTGTGTGACAAAATGGAAGCCACAGTCTTCTGTCCTGCAGATGAAGCTGCTCTTTGCCGTAGCTGCGATCGCACCATTCACCACGCCAACAAGCTTGCAACCAAACACCCTCGCTTCTCTCTCATCTTCCCCACCTCCCAAGACTTCCCTCTTTGTGATATCTGCCAAGAGAAGCGTGCATATCTATTTTGCCAAGAGGACAGGGCATTGCTGTGCAGGGAATGTGACCTTCCAATCCACATAGCGAATGAGCATACGCAGAAGCATAACAGGTTTCTTCTCACGGGTGTGAAGCTCTCGGCCACTTCTTTGGATTCTGCTTCCTCTTCCACCAATTGCACCGATAAAGTCACTGCCTCTGAAGGAAAAAACGCTCGATCTAGAATCAACAGACCCAGATCAATTTCCCATGAAAATCTCACCTCTTCTTGCAAGGCTGAAGACAACGTGGGCAGCGACACTGGTTCGGTTTCAACCAGCAGCATTTCTGAGTATTTGATCGAGACAATACCCGGTTACTGTTTCGAAGAACTCCTTGATGGTTCATTTGCACCTACTAATGGTTTCTGTAAGAAGCAGAACCATGATCATCGTTGGGCGTTTCAGAACCAAGATCTAGTTCAAGTTAGGACGTGTTTGGTTGGAGTTAAGGAAATTCCAAATGGGGGATGTTATGGTTGTGCCGTTCCTTAA | 711 | 0.4712 | MKIQCDVCDKMEATVFCPADEAALCRSCDRTIHHANKLATKHPRFSLIFPTSQDFPLCDICQEKRAYLFCQEDRALLCRECDLPIHIANEHTQKHNRFLLTGVKLSATSLDSASSSTNCTDKVTASEGKNARSRINRPRSISHENLTSSCKAEDNVGSDTGSVSTSSISEYLIETIPGYCFEELLDGSFAPTNGFCKKQNHDHRWAFQNQDLVQVRTCLVGVKEIPNGGCYGCAVP* | 237 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phac9g02041 | 236 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 207 | - | - | |
| Phac9g02041 | 236 | CDD | Bbox1_BBX-like | 5 | 47 | - | - | |
| Phac9g02041 | 236 | CDD | Bbox1_BBX-like | 57 | 100 | - | - | |
| Phac9g02041 | 236 | ProSiteProfiles | Zinc finger B-box type profile. | 53 | 100 | IPR000315 | GO:0008270 | |
| Phac9g02041 | 236 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270 | |
| Phac9g02041 | 236 | SMART | bboxneu5 | 53 | 100 | IPR000315 | GO:0008270 | |
| Phac9g02041 | 236 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 | |
| Phac9g02041 | 236 | Pfam | B-box zinc finger | 56 | 92 | IPR000315 | GO:0008270 | |
| Phac9g02041 | 236 | Gene3D | Classic Zinc Finger | 1 | 100 | - | - | |
| Phac9g02041 | 236 | FunFam | B-box zinc finger protein 21 | 1 | 98 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phac9g02041 | Phac-Chr9 | 19054678 | 19056257 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Phac9g02041 | 1 | 202 | C2C2-CO-like Transcription Factor Family | AT1G75540 | 50.472 | 3.33e-63 | 198 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | DBB | Phac9g02041 | zf-B_box | 4.5e-08 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Phac9g02041 | - | - | gmx:100800981 | 322.783 |