Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g01982 ATGTTGCACTGTGCGAACGCGTCGGGGACTCTGGCTGGGGACATGACAGTGTTGGAAAGACAGAGGGCGAGGATTAAGTGGCAAGAAGAGCAAGGGTACTTTTCTGGGTTCAACGCTGTTTTCTCTTCTTCTTCTTCTTCTCTTCATGTTCAAGATTCCTTGATGCTGGCTGCTGATTCCGGTTGTGCGCTTGGTGAAGTGGTGGCTCAGGCTCAGGCTCAGGCTCGCTCCATGAATAAGCCGTCTCTTGCTGGGTTTGATTCAAGTTCTTCAATTTCAAGGACTTTTAGTTGTCCGCCTGCTCTGGTGGAGCCCGAGCCCAGGCCCACCGACTCCTCAATTGGGAAAGAGAGTTTGAAGAAAAGGAAACCTGACAAGCTTCACAATGCTAAGTTTGTTACAGAAAATGATATGAAAGACAAGAGGATCAAAGTGGGCGCCGACGATGAACAATCCAAAATCACAGGGAGCCCCAAGAGTAACACGAAAACTAATAGCAACAAAAGAGAGACTTGTGCAGATACTTCAAACTCAAAGCAAAATTCCAAACCCTCCGAGGTTCAAAATCATAAGCCTGATTACATTCACGTACGAGCACGTCGTGGCCAAGCCACCGATAGCCATAGCTTAGCTGAAAGAGTCAGAAGGGAAAAAATTAGTGAGAGAATGAAGTATTTGCAAGATTTAGTACCTGGTTGCAACAAAATCACGGGAAAAGCTGGAATGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAGGTTGAGTTTCTGTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGAATTCAGCGTTGACGATCTATTTGAAAAAGAGGTGTTTCCTACTTCTGCTGCCAATTTTCCAAACATTGGAATGTCATCAGATTTGACTAACTCTGCCTATCTTCAATTTAATTCACCACAACAAATGGTTTCGTATGGAGGATTAGACACGGGGATTAACCCTCCCTTTATGGGTCTAAAAAGGAGTATAAGTGCTCATGTATCAATACCTGAAACATATCATCACTCTTCTTGTTTCACGCAAATGCTGCCCTCCTCAGCATGGGAAGGTGATTTCCAAAACCTTTGCAATTTGGATTTTGATCAAGTGCGAGCCACATCTTTCCCTTCTCATCTGTCCTCAGGACTGGTTGAAGCTGGCAATCATCTAAAGATGGAGATGTAG 1200 0.4425 MLHCANASGTLAGDMTVLERQRARIKWQEEQGYFSGFNAVFSSSSSSLHVQDSLMLAADSGCALGEVVAQAQAQARSMNKPSLAGFDSSSSISRTFSCPPALVEPEPRPTDSSIGKESLKKRKPDKLHNAKFVTENDMKDKRIKVGADDEQSKITGSPKSNTKTNSNKRETCADTSNSKQNSKPSEVQNHKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLEFSVDDLFEKEVFPTSAANFPNIGMSSDLTNSAYLQFNSPQQMVSYGGLDTGINPPFMGLKRSISAHVSIPETYHHSSCFTQMLPSSAWEGDFQNLCNLDFDQVRATSFPSHLSSGLVEAGNHLKMEM* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g01982 399 Gene3D - 200 275 IPR036638 GO:0046983
Phac9g01982 399 MobiDBLite consensus disorder prediction 110 149 - -
Phac9g01982 399 Pfam Helix-loop-helix DNA-binding domain 207 254 IPR011598 GO:0046983
Phac9g01982 399 FunFam Basic helix-loop-helix transcription factor 200 272 - -
Phac9g01982 399 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 203 253 IPR011598 GO:0046983
Phac9g01982 399 MobiDBLite consensus disorder prediction 96 192 - -
Phac9g01982 399 MobiDBLite consensus disorder prediction 153 188 - -
Phac9g01982 399 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 95 307 IPR024097 GO:0006355
Phac9g01982 399 CDD bHLH_AtBPE_like 193 278 - -
Phac9g01982 399 SMART finulus 209 259 IPR011598 GO:0046983
Phac9g01982 399 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 201 271 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g01982 Phac-Chr9 18704236 18707380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g01982 14 367 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 39.096 1.09e-63 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac9g01982 HLH 2.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g01982 - - gmx:100798855 570.852