Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g01950 ATGGTCGAACAGGGTGATGATAACAAAAACGGGGATTCTGATCCTAGTAATGTGCCAGAGACCAGTGTTATTAGCGAGAATCAGTTTGAGCTAGAAGATTCCAAGACCGTTTCGCACCATGAACTGATCACTCCTAAGCCTAAAGAAAAGAACATTAGAGAAATGAAGAATGTGCTAAATGATACCGAGATGACTGAGTATGATGAGTATGGCACACCTCTGGACCGAGAAACATTTATGAAAGAGATTGAGAATTTCTACAGAGAGCGGTCCTTGGAATTTAAGCCTCCTAAGTTTTATGGAGAGCCACTAAATTGCCTTAAGTTGTGGAGAGCTGTTATCAGACTAGGTGGCTATGATGTGGTAACTGGCTCCAAGTTGTGGCGACAAGTAGGAGAGTCTTTCAACCCCCCAAAGACATGTACTACAGTCTCATGGACATTTAGAATCTTTTATGAGAAGGCACTTTTAGAGTATGAAAAGCACAAGAGAGAGACTGGGGAGCTACAGCTCCCTGTTGGATCATTCCATCAATCTTCAAATGTGGAAAAAGAGACTACTGTTTACCAGGCTCCAGGATCAGGTAGAGCACGAAGGGATGCTGCAGCCCGTGCAATGCAAGGTTGGCATACTCAGCGCCTTCTTGGATATGGTGAGGTTGCTGAGCCAGCTACTAAGGACAAGAACTTCAGTTCCACTCCAAAGCGTGAAAAGAATCTAAAAAGCATTGGTATGATTAATAAACAGAGGACGCAGGCTGGTTTGGACCATGCTGAGAAAGCTGCAAATATTGAAGGAGATAGACAATTGATCACAGCAGTGGTGGACATTGGACCCCCAGCTGACTGGGTGAAGATCAATGTACGGGAAACTAAAGATTGTTTCGAGGTGTATGCCCTAGTTCCCGGGCTCCTTCGTGAGGAGGTGCGAGTCCAATCAGATCCAGTTGGACGTCTGGTTATAACTGGTCTGCCAGAACACATTGATAATCCATGGGGAATTACCCCCTTCAAAAAGGTAGTGAACTTACCTGCAAGAATTGATCCGCTTCAGACATCCGCTGTCGTTAGTTTGCATGGTCGACTATTTGTACGGGTTCCTTTTGAGCAGGGAGCTGTATGA 1122 0.4501 MVEQGDDNKNGDSDPSNVPETSVISENQFELEDSKTVSHHELITPKPKEKNIREMKNVLNDTEMTEYDEYGTPLDRETFMKEIENFYRERSLEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTGSKLWRQVGESFNPPKTCTTVSWTFRIFYEKALLEYEKHKRETGELQLPVGSFHQSSNVEKETTVYQAPGSGRARRDAAARAMQGWHTQRLLGYGEVAEPATKDKNFSSTPKREKNLKSIGMINKQRTQAGLDHAEKAANIEGDRQLITAVVDIGPPADWVKINVRETKDCFEVYALVPGLLREEVRVQSDPVGRLVITGLPEHIDNPWGITPFKKVVNLPARIDPLQTSAVVSLHGRLFVRVPFEQGAV* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g01950 373 ProSiteProfiles ARID domain profile. 73 164 IPR001606 GO:0003677
Phac9g01950 373 MobiDBLite consensus disorder prediction 11 31 - -
Phac9g01950 373 MobiDBLite consensus disorder prediction 32 50 - -
Phac9g01950 373 SMART ARID_2 70 160 - -
Phac9g01950 373 Gene3D - 74 172 IPR036431 GO:0003677
Phac9g01950 373 SMART bright_3 74 165 IPR001606 GO:0003677
Phac9g01950 373 CDD ACD_sHsps_p23-like 288 367 - -
Phac9g01950 373 CDD ARID 75 160 - -
Phac9g01950 373 FunFam AT-rich interactive domain-containing protein 3 73 172 - -
Phac9g01950 373 Pfam ARID/BRIGHT DNA binding domain 76 160 IPR001606 GO:0003677
Phac9g01950 373 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 36 370 IPR045147 GO:0006357
Phac9g01950 373 SUPERFAMILY ARID-like 61 171 IPR036431 GO:0003677
Phac9g01950 373 Gene3D - 272 372 IPR008978 -
Phac9g01950 373 FunFam AT-rich interactive domain-containing protein 3 264 372 - -
Phac9g01950 373 MobiDBLite consensus disorder prediction 1 50 - -
Phac9g01950 373 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 272 373 IPR002068 -
Phac9g01950 373 SUPERFAMILY HSP20-like chaperones 281 368 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g01950 Phac-Chr9 18350553 18358431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g01950 7 370 ARID Transcription Factor Family AT1G76510 65.753 2.51e-161 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Phac9g01950 ARID 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g01950 - - gmx:100797486 690.649