Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g01942 ATGAGCATGTCCGGATCTGACATGGTAACCAGGGAGCAATTCACGATTGGGATGCACAACCCGCACAACCCTCAATCCCAACCGCAACAACAACAACAACCTCAACTTCATCAAAACATGCGTATGGACTATGCTGCTGCTGACGAGGCCGCTGTTTTCGCCGCACCTACCATCAACATCAACGGCGGAGAATCCTCTCCAGGGACTGTGCCTCCGGGCTTGGGCCTGGGCCAGGCCCATCCCCAGGTCATGATGGGTAACTCCACTGAGTCACTCAAGAGAAAGAGGGGAAGGCCCAGGAAATACGGGCCTGATGGTGGCATGGCCTTGAGCTTGAACACCACACCTCCTTCCGGTGGCTCCGCGGTGCCTGTTGGCCATTCCGGTGGGGCATTCCCGGCGGCTCCTCTCTCTGATTCTGCCTCAGCCGGTACTGGGAAGCGCAGGGGCAGACCTCGTGGTTCTGTTAACAAGAATAAGAAAAGCTCAAAGTTCTATGGGCCAGGACTTTTCTTTACTCCGCATGTCATTACCGTGAAAGCTGGAGAGGATTTGTCAGCAAGAATTATGTCAATTTCCCAGAGTGGTTCAAGAAACGTTTGCATATTAAGTGCAAATGGATCCATATCTAATGTGACACTTAGACAGCCTGCCTCGTCTGGTGGAACTGTGACTTATGAGGGGCGATTTGAGATCTTATCACTTGGTGGTTCTTTGTTTCTTACTGAAAATGGTGCTCACGGCGAAAGGGCTGGGGGCCTGAGTGTGTCCTTGTCAGGGCCAGATGGCCGCGTCTTGGGGGGCGGAGTGGCAGGTCTTTTGGTGGCTGCCTCCCCTGTTCAGATTGTTTTGGCTAGTTTTGTTTCCGATGGCAAGCAATCCAAGTCTGCAAAGCGGATGAGGAATGTATCTGCCCCAGAAAAGGTTTCCACAGCTGTTGGCCAAAGCAGCTCACCATCAAGGGGCACTCTCAGTGAGTCTTCAGGTGGGGTCGGGAGTGGGAGCCCACTAAACCAAAGCACAGGAGACTGCATCAACAATATCAACAGCACCACCCCAACGCCAGGCTTTTCAGGCATGCCCTGGAAGTAA 1092 0.5321 MSMSGSDMVTREQFTIGMHNPHNPQSQPQQQQQPQLHQNMRMDYAAADEAAVFAAPTININGGESSPGTVPPGLGLGQAHPQVMMGNSTESLKRKRGRPRKYGPDGGMALSLNTTPPSGGSAVPVGHSGGAFPAAPLSDSASAGTGKRRGRPRGSVNKNKKSSKFYGPGLFFTPHVITVKAGEDLSARIMSISQSGSRNVCILSANGSISNVTLRQPASSGGTVTYEGRFEILSLGGSLFLTENGAHGERAGGLSVSLSGPDGRVLGGGVAGLLVAASPVQIVLASFVSDGKQSKSAKRMRNVSAPEKVSTAVGQSSSPSRGTLSESSGGVGSGSPLNQSTGDCINNINSTTPTPGFSGMPWK* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g01942 363 SMART AT_hook_2 93 105 IPR017956 GO:0003677
Phac9g01942 363 SMART AT_hook_2 146 158 IPR017956 GO:0003677
Phac9g01942 363 ProSiteProfiles PPC domain profile profile. 166 311 IPR005175 -
Phac9g01942 363 Gene3D - 174 303 - -
Phac9g01942 363 MobiDBLite consensus disorder prediction 308 357 - -
Phac9g01942 363 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 27 347 IPR039605 GO:0003680
Phac9g01942 363 MobiDBLite consensus disorder prediction 87 161 - -
Phac9g01942 363 Pfam Plants and Prokaryotes Conserved (PCC) domain 174 288 IPR005175 -
Phac9g01942 363 CDD DUF296 173 287 IPR005175 -
Phac9g01942 363 MobiDBLite consensus disorder prediction 17 38 - -
Phac9g01942 363 MobiDBLite consensus disorder prediction 295 363 - -
Phac9g01942 363 SUPERFAMILY AF0104/ALDC/Ptd012-like 172 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g01942 Phac-Chr9 18312908 18317157 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g01942 84 363 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 53.125 2.03e-78 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g01942 - - pvu:PHAVU_009G008300g 624.009