Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g01916 ATGAATTTGTTTCGGGTAGTTTATTGGGTAGTGTGGTGTTTGGGATCTGTTGGGGCTGCAAACGTGTCATCCTCGAGACCCTCCGTCGTCAACATTGGGGCAATCTTCAACATCGATTCCGTCCTTGGGAAAGTGGCTAAACTTACATTGGAGGAAGCCGTGAAAGATGTTAACGCCGACACTAACATTCTACATGGAACTGAAATTGTTCTCACTATGCAAAATTCCAATTACAGCGGTTTCTTAGGCATGGTTCAAGCTTTGCGGTTCATGGAGACTGATGTGGTTGCAATAATAGGACCACAATCTTCTGTGGTTGCCCATATAATATCCCATGTTGCTAATGAACTACGGGTTCCTTTATTGTCATTTGCGGCAACAGACCCTACCCTCACATCGCTGCAGTTTCCTTTCTTTGTGAGGACAACACAGAGTGATTTGTACCAAATGAAGGCTGTAGCTGAAATCATTGATTACTATGGTTGGAAGGAGGTGATTGCCATATATGTGGATGATGATTATGGACGGAATGGTGTGGCTGCTTTGGACGATGAACTAGCTGCCAGGCGCTGTAGAATCTCCTTCAAGGAAGGAATTAATTCCGGAACTGAAGTCAACCGGGGAGAAATTACTAGTTTGCTTGTGAAAGTGGCACTGATGCAGTCTCGGGTCATTGTTCTACATGCTCAAACTGATTATGGTTTTATGGTTTTCAATGTGGCACGTTACCTTGGGATGACAGACAATGGTTATGTGTGGATAGTCACAGACTGGCTCTCTTCACTTTTGGATTCTGCCTCTCTCCCTTCAGAGACAATGGATGTTCTCCAGGGAGTACTCGTTCTGCGCCAGCACACACCTGATTCAGATAGAAAAAGTGCATTTTCCTCTAGGTGGAACAAGTTGACTGGTGGCTCTTTGGGGTTACATTCTTATGGCCTCTATGCTTATGATTCTGTTTGGCTTGTTGCACGGGCCATTGATGCTTTTTTCAGTCAGGGTGGGGTTGTTTCGTGTACTAATTACACAAGTTTAGGTGGTGAGAATAAGGGAGGTGATCTGAACCTTGATGCAATGAGCATTTTTGACAACGGAACGCTTCTGCTGGAGAACATATTGCAGAGTGATTTTGTTGGACTATCAGGTCGAATGAAATTTGAACCAGATCGATCTCTCGTTCATCCTGCCTATGACGTCCTTAATGTGGTTGGAACTGGGCTTAGGAGGGTTGGTTACTGGTCCAACTATTCTGGTTTGTCAATTGTATCTCCTGAGATACTGTATGCTAAGCTACCTAATAGATCTAGTGCGAATCAGAAGCTTTACAGTGTGATATGGCCTGGAGAAACATTATCTAAACCCCGTGGATGGGTCTTCCCAAATAATGGTAGACAGTTGAGAATTGGTGTGCCTATCCGAGTCAGTTTCCGTGAATTTCTCTCACCAGTGAAGGGAACTCAGATGTTCAATGGTTTTTGTGTCGATGTATTCACAGCAGCTCTGAACTTGTTGCCTTATGCTGTTCCTTACCGCTTTGTTCCATTTGGTGATGGACACAAAAATCCAAGCTACACAGAACTTGTCCACTTAATCACAACTGGTTACTTTGATGGTGCCATCGGTGATATTGCTATTGTCACAAATCGGACAAGGATTGTAGATTTTACGCAACCATATGCATCATCGGGACTTGTTGTGGTGGCCCCATTCACAAAAATTAATTCTGGTGGTTGGGCTTTCCTGCAGCCATTTACTCCTCTTATGTGGATTGTGACTGCTACTTTCTTTCTTCTCATTGGGATAGTTATATGGATTCTGGAACACAGGATAAATGATGAGTTCAGGGGTCCACCCAGACAGCAAATTATAACCTTGTTATGGTTTAGCCTGTCAACTCTGTTTTTTTCCCACAGAGAGAATACCATGAGTTCTCTTGGTCGGTTTGTGATGCTCATATGGCTATTTGTGGTTTTGATCCTCACTTCCAGCTACACTGCAAGTTTAACATCCATACTCACAGTGCAACAGTTATCTTCTCGTATCAGTGGAATAGATAGCTTAAAGGCTAGTGATGAACCTATAGGATTCCAAGTGGGTTCATTTGCAGAACATTACCTGATTCAAGACATTGGAATTTCCAAATCTAGGCTTATTGCCCTAGGATCTCCAGAAGAATATGCTAAGGCCCTTCAGCTTGGTCCTAAAAGAGGAGGTGTTGCTGCTATTGTTGATGAACGACCTTATGTTGAGATCTTCTTATCAAGCCAGTGCACGTTCAGAATTGTTGGTCAGGAGTTCACCAGAAGTGGCTGGGGTTTTGCATTCCCACGGGACTCCCCTTTGGCTGTGGATATGTCAACAGCCATTCTACAACTTTCTGAAACCGGTGATCTACAGCGGATTCATGACAAGTGGATGACACGAAGCTCTTGTAGTTTAGACAATACTGAAATCGACTCAGATCGTCTTCAGCTTAAAAGCTTCTGGGGTCTCTTTATCATTTGCGGGATAGCTTGCTTTGTTGCTCTTCTTTTGCATTTTTTGCAGATTATGTTCCAGTTATGGAAATCTCCTCCTTCTGAACCTGCCGCTTCTACTGCCTGTTCAATTTCTGGTCGTTTTCAAAGATTTCTTTCGCTCATTGATGCGAAAGAAGATTCATCAGGGAGTAAAGGAAAAAAGAGAGAAAGATCACTTGAAGATCCCCTGGGAAGGCACTCAAAGAAGGTACAACTACAAACAGAAATGGCTACCTAA 2757 0.4338 MNLFRVVYWVVWCLGSVGAANVSSSRPSVVNIGAIFNIDSVLGKVAKLTLEEAVKDVNADTNILHGTEIVLTMQNSNYSGFLGMVQALRFMETDVVAIIGPQSSVVAHIISHVANELRVPLLSFAATDPTLTSLQFPFFVRTTQSDLYQMKAVAEIIDYYGWKEVIAIYVDDDYGRNGVAALDDELAARRCRISFKEGINSGTEVNRGEITSLLVKVALMQSRVIVLHAQTDYGFMVFNVARYLGMTDNGYVWIVTDWLSSLLDSASLPSETMDVLQGVLVLRQHTPDSDRKSAFSSRWNKLTGGSLGLHSYGLYAYDSVWLVARAIDAFFSQGGVVSCTNYTSLGGENKGGDLNLDAMSIFDNGTLLLENILQSDFVGLSGRMKFEPDRSLVHPAYDVLNVVGTGLRRVGYWSNYSGLSIVSPEILYAKLPNRSSANQKLYSVIWPGETLSKPRGWVFPNNGRQLRIGVPIRVSFREFLSPVKGTQMFNGFCVDVFTAALNLLPYAVPYRFVPFGDGHKNPSYTELVHLITTGYFDGAIGDIAIVTNRTRIVDFTQPYASSGLVVVAPFTKINSGGWAFLQPFTPLMWIVTATFFLLIGIVIWILEHRINDEFRGPPRQQIITLLWFSLSTLFFSHRENTMSSLGRFVMLIWLFVVLILTSSYTASLTSILTVQQLSSRISGIDSLKASDEPIGFQVGSFAEHYLIQDIGISKSRLIALGSPEEYAKALQLGPKRGGVAAIVDERPYVEIFLSSQCTFRIVGQEFTRSGWGFAFPRDSPLAVDMSTAILQLSETGDLQRIHDKWMTRSSCSLDNTEIDSDRLQLKSFWGLFIICGIACFVALLLHFLQIMFQLWKSPPSEPAASTACSISGRFQRFLSLIDAKEDSSGSKGKKRERSLEDPLGRHSKKVQLQTEMAT* 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g01916 918 Gene3D - 772 805 - -
Phac9g01916 918 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 30 857 IPR015683 -
Phac9g01916 918 FunFam Glutamate receptor 703 810 - -
Phac9g01916 918 Gene3D - 145 419 - -
Phac9g01916 918 MobiDBLite consensus disorder prediction 886 908 - -
Phac9g01916 918 Pfam Ligand-gated ion channel 808 839 IPR001320 GO:0015276|GO:0016020
Phac9g01916 918 Gene3D - 461 576 - -
Phac9g01916 918 SUPERFAMILY Periplasmic binding protein-like I 24 458 IPR028082 -
Phac9g01916 918 Gene3D - 49 394 - -
Phac9g01916 918 SUPERFAMILY Periplasmic binding protein-like II 442 808 - -
Phac9g01916 918 FunFam Glutamate receptor 461 576 - -
Phac9g01916 918 SMART GluR_14 467 808 IPR001320 GO:0015276|GO:0016020
Phac9g01916 918 FunFam Glutamate receptor 577 707 - -
Phac9g01916 918 Gene3D - 577 705 - -
Phac9g01916 918 Pfam Bacterial extracellular solute-binding proteins, family 3 489 807 IPR001638 -
Phac9g01916 918 CDD GluR_Plant 464 805 - -
Phac9g01916 918 CDD PBP1_GABAb_receptor_plant 31 422 IPR044440 -
Phac9g01916 918 PRINTS Metabotropic glutamate GPCR signature 149 165 IPR000337 GO:0004930|GO:0007186|GO:0016020
Phac9g01916 918 PRINTS Metabotropic glutamate GPCR signature 165 182 IPR000337 GO:0004930|GO:0007186|GO:0016020
Phac9g01916 918 PRINTS Metabotropic glutamate GPCR signature 130 149 IPR000337 GO:0004930|GO:0007186|GO:0016020
Phac9g01916 918 PRINTS Metabotropic glutamate GPCR signature 98 124 IPR000337 GO:0004930|GO:0007186|GO:0016020
Phac9g01916 918 PIRSF IGluLR_plant 1 917 IPR017103 -
Phac9g01916 918 Pfam Receptor family ligand binding region 50 404 IPR001828 -
Phac9g01916 918 MobiDBLite consensus disorder prediction 884 918 - -
Phac9g01916 918 FunFam Glutamate receptor 145 299 - -
Phac9g01916 918 Gene3D - 738 771 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g01916 Phac-Chr9 18215993 18221179 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g01916 24 904 Ion Channels AT1G42540 63.973 0.0 1235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g01916 K05387 - gmx:102661260 1612.05