Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g01914 ATGAATTTGTTTCGGGTAGTTTATTGGGTAGTGTGGTGTTTGGGATCTGTTGGGGCTGCAAACGTGTCATCCTCGAGACCCTCCGTCGTCAACATTGGGGCAATCTTCAACATCGATTCCGTCCTTGGGAAAGTGGCTAAACTTACATTGGAGGAAGCCGTGAAAGATGTTAACGCCGACACTAACATTCTACATGGAACTGAAATTGTTCTCACTATGCAAAATTCCAATTACAGCGGTTTCTTAGGCATGGTTCAAGCTTTGCGGTTCATGGAGACTGATGTGGTTGCAATAATAGGACCACAATCTTCTGTGGTTGCCCATATAATATCCCATGTTGCTAATGAACTACGGGTTCCTTTATTGTCATTTGCGGCAACAGACCCTACCCTCACATCGCTGCAGTTTCCTTTCTTTGTGAGGACAACACAGAGTGATTTGTACCAAATGAAGGCTGTAGCTGAAATCATTGATTACTATGGTTGGAAGGAGGTGATTGCCATATATGTGGATGATGATTATGGACGGAATGGTGTGGCTGCTTTGGACGATGAACTAGCTGCCAGGCGCTGTAGAATCTCCTTCAAGGAAGGAATTAATTCCGGAACTGAAGTCAACCGGGGAGAAATTACTAGTTTGCTTGTGAAAGTGGCACTGATGCAGTCTCGGGTCATTGTTCTACATGCTCAAACTGATTATGGTTTTATGGTTTTCAATGTGGCACGTTACCTTGGGATGACAGACAATGGTTATGTGTGGATAGTCACAGACTGGCTCTCTTCACTTTTGGATTCTGCCTCTCTCCCTTCAGAGACAATGGATTTGACTGGTGGCTCTTTGGGGTTACATTCTTATGGCCTCTATGCTTATGATTCTGTTTGGCTTGTTGCACGGGCCATTGATGCTTTTTTCAGTCAGGGTGGGGTTGTTTCGTGTACTAATTACACAAGTTTAGGTGGTGAGAATAAGGGAGGTGATCTGAACCTTGATGCAATGAGCATTTTTGACAACGGAACGCTTCTGCTGGAGAACATATTGCAGAGTGATTTTGTTGGACTATCAGGTCGAATGAAATTTGAACCAGATCGATCTCTCGTTCATCCTGCCTATGACGTCCTTAATGTGGTTGGAACTGGGCTTAGGAGGGTTGGTTACTGGTCCAACTATTCTGGTTTGTCAATTGTATCTCCTGAGATACTGTATGCTAAGCTACCTAATAGATCTAGTGCGAATCAGAAGCTTTACAGTGTGATATGGCCTGGAGAAACATTATCTAAACCCCGTGGATGGGTCTTCCCAAATAATGGTAGACAGTTGAGAATTGGTGTGCCTATCCGAGTCAGTTTCCGTGAATTTCTCTCACCAGTGAAGGGAACTCAGATGTTCAATGGTTTTTGTGTCGATGTATTCACAGCAGCTCTGAACTTGTTGCCTTATGCTGTTCCTTACCGCTTTGTTCCATTTGGTGATGGACACAAAAATCCAAGCTACACAGAACTTGTCCACTTAATCACAACTGGTTACTTTGATGGTGCCATCGGTGATATTGCTATTGTCACAAATCGGACAAGGATTGTAGATTTTACGCAACCATATGCATCATCGGGACTTGTTGTGGTGGCCCCATTCACAAAAATTAATTCTGGTGGTTGGGCTTTCCTGCAGCCATTTACTCCTCTTATGTGGATTGTGACTGCTACTTTCTTTCTTCTCATTGGGATAGTTATATGGATTCTGGAACACAGGATAAATGATGAGTTCAGGGGTCCACCCAGACAGCAAATTATAACCTTGTTATGGTTTAGCCTGTCAACTCTGTTTTTTTCCCACAGAGAGAATACCATGAGTTCTCTTGGTCGGTTTGTGATGCTCATATGGCTATTTGTGGTTTTGATCCTCACTTCCAGCTACACTGCAAGTTTAACATCCATACTCACAGTGCAACAGTTATCTTCTCGTATCAGTGGAATAGATAGCTTAAAGGCTAGTGATGAACCTATAGGATTCCAAGTGGGTTCATTTGCAGAACATTACCTGATTCAAGACATTGGAATTTCCAAATCTAGGCTTATTGCCCTAGGATCTCCAGAAGAATATGCTAAGGCCCTTCAGCTTGGTCCTAAAAGAGGAGGTGTTGCTGCTATTGTTGATGAACGACCTTATGTTGAGATCTTCTTATCAAGCCAGTGCACGTTCAGAATTGTTGGTCAGGAGTTCACCAGAAGTGGCTGGGGTTTTGCATTCCCACGGGACTCCCCTTTGGCTGTGGATATGTCAACAGCCATTCTACAACTTTCTGAAACCGGTGATCTACAGCGGATTCATGACAAGTGGATGACACGAAGCTCTTGTAGTTTAGACAATACTGAAATCGACTCAGATCGTCTTCAGCTTAAAAGCTTCTGGGGTCTCTTTATCATTTGCGGGATAGCTTGCTTTGTTGCTCTTCTTTTGCATTTTTTGCAGATTATGTTCCAGTTATGGAAATCTCCTCCTTCTGAACCTGCCGCTTCTACTGCCTGTTCAATTTCTGGTCGTTTTCAAAGATTTCTTTCGCTCATTGATGCGAAAGAAGATTCATCAGGGAGTAAAGGAAAAAAGAGAGAAAGATCACTTGAAGATCCCCTGGGAAGGCACTCAAAGAAGGTACAACTACAAACAGAAATGGCTACCTAA 2676 0.4324 MNLFRVVYWVVWCLGSVGAANVSSSRPSVVNIGAIFNIDSVLGKVAKLTLEEAVKDVNADTNILHGTEIVLTMQNSNYSGFLGMVQALRFMETDVVAIIGPQSSVVAHIISHVANELRVPLLSFAATDPTLTSLQFPFFVRTTQSDLYQMKAVAEIIDYYGWKEVIAIYVDDDYGRNGVAALDDELAARRCRISFKEGINSGTEVNRGEITSLLVKVALMQSRVIVLHAQTDYGFMVFNVARYLGMTDNGYVWIVTDWLSSLLDSASLPSETMDLTGGSLGLHSYGLYAYDSVWLVARAIDAFFSQGGVVSCTNYTSLGGENKGGDLNLDAMSIFDNGTLLLENILQSDFVGLSGRMKFEPDRSLVHPAYDVLNVVGTGLRRVGYWSNYSGLSIVSPEILYAKLPNRSSANQKLYSVIWPGETLSKPRGWVFPNNGRQLRIGVPIRVSFREFLSPVKGTQMFNGFCVDVFTAALNLLPYAVPYRFVPFGDGHKNPSYTELVHLITTGYFDGAIGDIAIVTNRTRIVDFTQPYASSGLVVVAPFTKINSGGWAFLQPFTPLMWIVTATFFLLIGIVIWILEHRINDEFRGPPRQQIITLLWFSLSTLFFSHRENTMSSLGRFVMLIWLFVVLILTSSYTASLTSILTVQQLSSRISGIDSLKASDEPIGFQVGSFAEHYLIQDIGISKSRLIALGSPEEYAKALQLGPKRGGVAAIVDERPYVEIFLSSQCTFRIVGQEFTRSGWGFAFPRDSPLAVDMSTAILQLSETGDLQRIHDKWMTRSSCSLDNTEIDSDRLQLKSFWGLFIICGIACFVALLLHFLQIMFQLWKSPPSEPAASTACSISGRFQRFLSLIDAKEDSSGSKGKKRERSLEDPLGRHSKKVQLQTEMAT* 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g01914 891 FunFam Glutamate receptor 434 549 - -
Phac9g01914 891 MobiDBLite consensus disorder prediction 859 881 - -
Phac9g01914 891 Pfam Receptor family ligand binding region 283 377 IPR001828 -
Phac9g01914 891 Pfam Receptor family ligand binding region 50 282 IPR001828 -
Phac9g01914 891 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 30 830 IPR015683 -
Phac9g01914 891 CDD GluR_Plant 437 778 - -
Phac9g01914 891 FunFam Glutamate receptor 145 301 - -
Phac9g01914 891 Pfam Ligand-gated ion channel 781 812 IPR001320 GO:0015276|GO:0016020
Phac9g01914 891 Gene3D - 742 778 - -
Phac9g01914 891 SMART GluR_14 440 781 IPR001320 GO:0015276|GO:0016020
Phac9g01914 891 Gene3D - 145 277 - -
Phac9g01914 891 Gene3D - 368 392 - -
Phac9g01914 891 SUPERFAMILY Periplasmic binding protein-like II 415 781 - -
Phac9g01914 891 Gene3D - 283 367 - -
Phac9g01914 891 Gene3D - 49 144 - -
Phac9g01914 891 Gene3D - 710 741 - -
Phac9g01914 891 Pfam Bacterial extracellular solute-binding proteins, family 3 462 780 IPR001638 -
Phac9g01914 891 SUPERFAMILY Periplasmic binding protein-like I 24 431 IPR028082 -
Phac9g01914 891 MobiDBLite consensus disorder prediction 857 891 - -
Phac9g01914 891 PIRSF IGluLR_plant 278 890 IPR017103 -
Phac9g01914 891 PIRSF IGluLR_plant 1 285 IPR017103 -
Phac9g01914 891 CDD PBP1_GABAb_receptor_plant 31 395 IPR044440 -
Phac9g01914 891 Gene3D - 434 549 - -
Phac9g01914 891 Gene3D - 550 678 - -
Phac9g01914 891 PRINTS Metabotropic glutamate GPCR signature 98 124 IPR000337 GO:0004930|GO:0007186|GO:0016020
Phac9g01914 891 PRINTS Metabotropic glutamate GPCR signature 130 149 IPR000337 GO:0004930|GO:0007186|GO:0016020
Phac9g01914 891 PRINTS Metabotropic glutamate GPCR signature 149 165 IPR000337 GO:0004930|GO:0007186|GO:0016020
Phac9g01914 891 PRINTS Metabotropic glutamate GPCR signature 165 182 IPR000337 GO:0004930|GO:0007186|GO:0016020
Phac9g01914 891 FunFam Glutamate receptor 550 680 - -
Phac9g01914 891 FunFam Glutamate receptor 676 783 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g01914 Phac-Chr9 18215993 18221179 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g01914 24 877 Ion Channels AT1G42540 61.953 0.0 1184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g01914 K05387 - gmx:102661260 1550.03