Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g01880 ATGAAAGGAGGCAAGTCAAAAACCGAATCTAAGAGAGCCGATGCCAAACTTGCTGTGAATAAGAAGGGTGCAGCCACCAAGTCCAGGAAACCAGCAGGCAAGGGGAAGGCTGCGAAAGACCCTAACAAGCCAAAGAGGCCTCCCAGTGCTTTCTTTGTTTTCATGGAGGAATTTAGGAAGCAATTCAACAAGGAACACCCTGACAACAAAGCCGTTTCTGCCGTTGGAAAGGCTGCTGGAGCAAAATGGAAAACAATGTCCGATGCTGATAAAGCACCATTTGTGGTAAAGTCTGAGAAACGAAAGGTGGAGTATGAGAAAAGCATGAGAGCCTATAACAAGAAGCAGGCGGAAGGTCCTACTGCTGGAGATGAAGAAGAATCTGAGAAGTCAGTATCTGAGGTGAATGATGAGGATGATGATGAGGAGGGCAGTGGCGAGGAGGAGGATGATGATTAG 459 0.4728 MKGGKSKTESKRADAKLAVNKKGAATKSRKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRKQFNKEHPDNKAVSAVGKAAGAKWKTMSDADKAPFVVKSEKRKVEYEKSMRAYNKKQAEGPTAGDEEESEKSVSEVNDEDDDEEGSGEEEDDD* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g01880 152 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 148 IPR031061 -
Phac9g01880 152 MobiDBLite consensus disorder prediction 80 152 - -
Phac9g01880 152 SMART hmgende2 43 114 IPR009071 -
Phac9g01880 152 MobiDBLite consensus disorder prediction 93 129 - -
Phac9g01880 152 MobiDBLite consensus disorder prediction 1 49 - -
Phac9g01880 152 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 44 113 IPR009071 -
Phac9g01880 152 SUPERFAMILY HMG-box 32 120 IPR036910 -
Phac9g01880 152 MobiDBLite consensus disorder prediction 130 152 - -
Phac9g01880 152 CDD HMG-box_AtHMGB1-like 45 105 - -
Phac9g01880 152 Coils Coil 95 115 - -
Phac9g01880 152 Pfam HMG (high mobility group) box 44 113 IPR009071 -
Phac9g01880 152 MobiDBLite consensus disorder prediction 1 18 - -
Phac9g01880 152 Gene3D High mobility group box domain 26 129 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g01880 Phac-Chr9 17799627 17802903 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Phac9g01880 HMG_box 1.9e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g01880 K25507 - gmx:100500173 211.846