Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g01846 ATGAAGATCCAGTGCGACGTGTGTAACAAACATCAGGCTTCTTTATTCTGCACCGCCGATGAAGCCGCCCTCTGCGACGCCTGCGACCACCGTGTCCACCACGCCAACAAGCTCGCCTCCAAACACCAACGCTTCTCTCTCACCCACCCCTCTGCTAAGCATTTTCCTCTCTGTGATGTTTGCCAGGAGAGAAGAGCTTTTGTGTTTTGTCAGCAAGATAGAGCGATTCTGTGCAAAGAGTGTGACGGCTCCATTCATTCGGCCAACGAACTCACCAAGAACCATAGCAGGTTCCTCCTCACCGGGATCAAGTTCTCTGCTTCTCTCCTGCCTTATTCTTCTTCTTCTTCTTCTTCTTCTTCATTATCATCACCCAAGAAAAACCCTGTTCTCGATTCTTCACACCCACTTTCCAATCCTCCTTCAACACCCTCACCGCCTAAACCTGGGGGAAACTTGCAAACAAATCAAGAACCTGGTTTCACAGGTAGCAGCATATCAGAGTACTTGATAAACACTATCCCAGGCATGAAGTTCGAAGACTTCCTCGATTCCCATTCAACCTTTGCTTGCACTAAGAATGGTGATGAGATGTGTTCGCTGTTTGGTGAGGGAAACATGGTTTCGTTCTCCCCTGGTGGAATCTGGGTTCCTCAAGCGCCACCTTCTTCTGCTGCATATTGGGAACAGATGAGTGAGCAGAATGGATACAAAGAGAGAAGGGAAGGTAGCATTAGATCAAGTTTGGGGGATGATAACTTCATAGTTCCTCAGATGAGTCCTCCCAGCAACGTTTCCAAGAGATCCAAGGTTCTTTGGTAG 822 0.4818 MKIQCDVCNKHQASLFCTADEAALCDACDHRVHHANKLASKHQRFSLTHPSAKHFPLCDVCQERRAFVFCQQDRAILCKECDGSIHSANELTKNHSRFLLTGIKFSASLLPYSSSSSSSSSLSSPKKNPVLDSSHPLSNPPSTPSPPKPGGNLQTNQEPGFTGSSISEYLINTIPGMKFEDFLDSHSTFACTKNGDEMCSLFGEGNMVSFSPGGIWVPQAPPSSAAYWEQMSEQNGYKERREGSIRSSLGDDNFIVPQMSPPSNVSKRSKVLW* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g01846 273 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Phac9g01846 273 CDD Bbox1_BBX-like 5 47 - -
Phac9g01846 273 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Phac9g01846 273 SMART bboxneu5 53 100 IPR000315 GO:0008270
Phac9g01846 273 SMART bboxneu5 4 47 IPR000315 GO:0008270
Phac9g01846 273 MobiDBLite consensus disorder prediction 115 159 - -
Phac9g01846 273 FunFam B-box zinc finger protein 21 1 98 - -
Phac9g01846 273 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 262 - -
Phac9g01846 273 Gene3D Classic Zinc Finger 1 97 - -
Phac9g01846 273 MobiDBLite consensus disorder prediction 115 138 - -
Phac9g01846 273 MobiDBLite consensus disorder prediction 238 273 - -
Phac9g01846 273 CDD Bbox1_BBX-like 57 100 - -
Phac9g01846 273 MobiDBLite consensus disorder prediction 251 267 - -
Phac9g01846 273 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Phac9g01846 273 Pfam B-box zinc finger 56 96 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g01846 Phac-Chr9 15284344 15285928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g01846 1 273 C2C2-CO-like Transcription Factor Family AT1G75540 39.826 8.39e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Phac9g01846 zf-B_box 1.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g01846 - - gmx:100785978 433.335