Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g01809 ATGTCGACTTCCGGCGAGGATCATCATCAACCCCACCCCTCTCCTCATCCATCTCAATTCAAATTCCACCTATTGCACTCCCCTTCTCACTTTTCTCCCCTTCCCCATTCTCTTTTTCCCAATTTCCCCTTGAGTCAAAGATATGAAAGCAATAATTTCAAGTCTCACACAAGTAATCTCGAAGTAGCTCCTGATATGAGCAAAACAGTTAATCTTCCCCCTCCGGTTCAAATCGAGCCTTCCGTAAGAGGAAAGCAAAATGGTAAATCAAAACTTTCAAGAAACACAAAATCTGGGACTCACAGACCTGGTGCCGATTCCCCTAATTCAACTGTGGTTAACAACTGTCGTTATGACAGTTCCTTAGGACTGTTAACAAAGAAATTTGTGAGCTTGATCCAAGATGCTAAGGATGGCACCCTGGATCTTAATAAAACCGCTGAGATCTTGGAGGTTCAGAAAAGGAGAATTTATGACATTACAAATGTTCTTGAAGGAGTAGGATTGATAGAGAAAACTTCAAAGAATCATATACAGTGGAAGGGATGTGATGGACTTGGGCCACGAGAACTGGAAGACCAAATTAACAGTCTAAAGGCTGAAGTTGAAAGTCTATATGCCAGGGAATGCGAACTTGATGATTGTATAAGGAAAAAACAGGAGCTTCTAAGAAACCTAGAGGAAAGTGAAAGCTCTCAAAAGTACCTTTTTTTGACCAAGGAAGAGATTCTTAGTCTTCCATGCTTCCAGAATCAGGAAATTATTGCAATCAAGGCTCCAAAAGCTAGTTTCATCGAGGTCCCTGATCCTGATGAGGAATTAGTTTTCCGGCAAAGACAGTACAAAATGATTGTTAGAAGCGCCACTGGACCAATATATTTGTACCTCTTGAGCAAGGATGACTGCAAGTATGAGGATGATAGTGTCAAACGGGTGAAAGTAACGGATCCATCGTGGAATAGTGAGCACTACAGAAAGAGGGGTGTGGGATTATTAGAAAGCCAAGATGATAAAAAAAATACTTCTGAGAGTTTCAATTTTCAGGGATCACAATCATCTGGAATTCAAGAAATAACTCCCACCGATTTTGAAGTATGTATAACTTGA 1107 0.4065 MSTSGEDHHQPHPSPHPSQFKFHLLHSPSHFSPLPHSLFPNFPLSQRYESNNFKSHTSNLEVAPDMSKTVNLPPPVQIEPSVRGKQNGKSKLSRNTKSGTHRPGADSPNSTVVNNCRYDSSLGLLTKKFVSLIQDAKDGTLDLNKTAEILEVQKRRIYDITNVLEGVGLIEKTSKNHIQWKGCDGLGPRELEDQINSLKAEVESLYARECELDDCIRKKQELLRNLEESESSQKYLFLTKEEILSLPCFQNQEIIAIKAPKASFIEVPDPDEELVFRQRQYKMIVRSATGPIYLYLLSKDDCKYEDDSVKRVKVTDPSWNSEHYRKRGVGLLESQDDKKNTSESFNFQGSQSSGIQEITPTDFEVCIT* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g01809 368 FunFam E2F transcription factor 1 111 184 - -
Phac9g01809 368 PANTHER TRANSCRIPTION FACTOR E2F 78 310 IPR015633 GO:0000978|GO:0006357
Phac9g01809 368 Pfam E2F transcription factor CC-MB domain 198 297 IPR032198 GO:0046983
Phac9g01809 368 SUPERFAMILY "Winged helix" DNA-binding domain 117 180 IPR036390 -
Phac9g01809 368 Gene3D - 112 184 IPR036388 -
Phac9g01809 368 MobiDBLite consensus disorder prediction 83 112 - -
Phac9g01809 368 SMART E2F_TDP_2 117 182 IPR003316 GO:0005667|GO:0006355
Phac9g01809 368 MobiDBLite consensus disorder prediction 330 352 - -
Phac9g01809 368 MobiDBLite consensus disorder prediction 65 112 - -
Phac9g01809 368 Gene3D - 189 300 - -
Phac9g01809 368 Coils Coil 212 232 - -
Phac9g01809 368 SUPERFAMILY E2F-DP heterodimerization region 193 300 IPR037241 -
Phac9g01809 368 CDD E2F_DD 193 300 IPR032198 GO:0046983
Phac9g01809 368 Pfam E2F/DP family winged-helix DNA-binding domain 119 182 IPR003316 GO:0005667|GO:0006355
Phac9g01809 368 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g01809 Phac-Chr9 14798452 14802809 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g01809 2 310 E2F-DP Transcription Factor Family AT1G47870 47.688 1.45e-87 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Phac9g01809 E2F_CC-MB 1.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g01809 K06620 - gmx:100811650 525.398