Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g01797 ATGAATTTGAAGATGGATTCCGATAGAGCGAAGCTGTTCGTAGGGGGCATTTCTCGTGAAACCACCGAAGATGTTCTCAAAATCCACTTCGCCAAGTACGGCGCCGTTTTGGACTCCACAATCTCCTTAGACCACAGTACCCGATGCCCTAGAGGTTTCGGCTTCGTCACCTTCTCCGACCTCTCCGCCGCTGATCAAGCCCTCCAAGACACGCATGTCATTCTCGGAAGAACGGTAGAAGTGAAGAAAGCAATTCCCAGAAGTGAACAACAGCAACACCAAAACCAGTTATACAATAGAGGGGGAGGTAACTATAATAATAGTTGTGACTGTAGCAGTGACACCAACGTTAGGACTAAAAAGATTTTTGTAGGGGGTTTACCTGCTGGTATTTCTGAGGAGGAGTTTAAGCAATACTTTGAGAGGTTTGGTCGGATTACTGACGTTGTGGTGATGCAGGACAGTGTTACTCACCGGCCCAGGGGGTTTGGGTTCATCACGTTTGATTCCGAGGAATCGGTTCAAAGTGTTATGGTGAGGAGTTTTCATGACTTGAATGGTAGACAGGTGGAGGTCAAGAGGGCTGTTCCCAAAGAGGGGAACCATGGGTATGATGGTTTTAGTAAATTGAGAAGTAAGAGTGAAAGAGGAGTTCCTAAAAGTTTTGCTCCTTACAGTCCTAGGAACATGCTTCCGGGTTTTGCTCCTTTGCCGTGGTATAGTAGTGATGGAATATATGCATATGGGTCTAATGCTCACGGTTGCTGGTACCCTATGGGTGGGTATGGGGGGAATGGGTATGCGATTCCGTCTGATGCTTCTAGGAACTTCTGGTACGGGCCAATGATGGCTGGTCCTCAAGCATGTCAGGTGCCTTATGCTAGTGCTGTTCCAAACTTAGCGTATCTTGGAGGTAGGATTGGAATAGTAGGTAGTGGTGTAGGATCTTGGGGGTATGGTGGAATTCTTGGTTCTGGAACAAATTTGAAATTTGATCAACCTTTTATTGGCAACGGATTTGTTCCCGGCAACACGACATTGCATCTTGGTGTAAAGCAGAATATTTTGGACTCTTCGAGTTTGAAAGGAAGCACTGGTGAAATATCTAGCTGA 1113 0.4627 MNLKMDSDRAKLFVGGISRETTEDVLKIHFAKYGAVLDSTISLDHSTRCPRGFGFVTFSDLSAADQALQDTHVILGRTVEVKKAIPRSEQQQHQNQLYNRGGGNYNNSCDCSSDTNVRTKKIFVGGLPAGISEEEFKQYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQSVMVRSFHDLNGRQVEVKRAVPKEGNHGYDGFSKLRSKSERGVPKSFAPYSPRNMLPGFAPLPWYSSDGIYAYGSNAHGCWYPMGGYGGNGYAIPSDASRNFWYGPMMAGPQACQVPYASAVPNLAYLGGRIGIVGSGVGSWGYGGILGSGTNLKFDQPFIGNGFVPGNTTLHLGVKQNILDSSSLKGSTGEISS* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g01797 370 Gene3D - 116 204 IPR012677 -
Phac9g01797 370 SUPERFAMILY RNA-binding domain, RBD 6 108 IPR035979 GO:0003676
Phac9g01797 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 86 IPR000504 GO:0003723
Phac9g01797 370 SUPERFAMILY RNA-binding domain, RBD 116 205 IPR035979 GO:0003676
Phac9g01797 370 FunFam RNA-binding protein 1 116 206 - -
Phac9g01797 370 CDD RRM2_Hrp1p 121 198 - -
Phac9g01797 370 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 282 - -
Phac9g01797 370 SMART rrm1_1 11 82 IPR000504 GO:0003723
Phac9g01797 370 SMART rrm1_1 121 193 IPR000504 GO:0003723
Phac9g01797 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 179 IPR000504 GO:0003723
Phac9g01797 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 79 IPR000504 GO:0003723
Phac9g01797 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 197 IPR000504 GO:0003723
Phac9g01797 370 Gene3D - 2 113 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g01797 Phac-Chr9 14664329 14668578 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g01797 3 258 Eukaryotic Initiation Factors Gene Family AT2G36660 24.265 2.52e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g01797 K14411 - gmx:100816822 613.224