LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac9g01790	ATGATGGAATGCAACAAAGATGAAGCAGTTAGGGCCAAAGAAATAGCTGAGAGGAAATTTTCAGAAAGGGAATATGTTGGTGCAAAGAAATTTGCTCTCAAGGCTCAAAATCTCTATCCTGATTTGGAGGATATTACCCAGCTTTTGACAACAATTGATATCTATATATCTGCTGAGAATAAAGTAAGCGGAGAAATGGATTGGTATGGTATACTTGGAGTGAGCCCCTTTGCTGATGAAGAGACTGTCAGGAAGCAGTACAGGAAGCTGGCTCTCACTCTTCACCCTGACAAAAACAAGTCTTTGGGTGCAGAGGGTGCATTTAAGCTGGTTTCAGAGGCATGGAGTTTGTTATCAGATAAGACCAAGAGACTCGAATATAACCAGAAGAGGAGTTTGAAAGGATTCCAGCATAACACTTCCAACCATGTTGCATCTAAATCAGATGCACCCAGTGCAAATGGTTTTTATAATTTAAAGAAGAATGTAACTTCAAATGTCAGGACTGGTAATAATAATGGTCGGGCCCCTTCAACTGCAGTTCCTCCTTCACATAAAAAGGCTGATACCTTTTGGACTATCTGCAATCGGTGCAGGACACATTATGAATATCTCAGGATTTATTTGAATCACACCCTTTTATGTCCAAACTGTAATGAAGCTTTTGTTGCTGTCGAGAGGGGTCCACCACCAAACGTTTTTAAGCCACCAAATTGGTCTTCTCATCAACAACGGCATCAAAATTCTCAACACTCTGCTGGAAGTAATAATACAAACTTTCAGTGGGGTTCTCACAATAGAATGGCTAGTTTTGGTAGCACAGACGGATCAACATCTGTTGCAGCTCAAGCTGCAAGTGTTGTGCAGCAGGCAAGTGAGAAAGTAAGGAGAGAGGGTTCTTTTCACAAAGCTGAAAAACCTATGAAAAAAAGAAGGACAGATGATATTCGCATTAATGGCTATCAAGGATACATGGCTAATCATATGACTGGGGGACATGGAGCAGCTGGTTTGGGCAGCTTTTCTGAATCAGGAAAGGCTAACGTGGAAGCAGAAAGGAATCATGGTTTTTCAGGTCTGCCTGGAAAGCATTACAGCACAAGGGAATTGTCGATGTTTGAAATGCGAAACATGTTGATGGACAAGTCACGCAATGAAATTATTAAGAAACTTCAAGAATGGAAATCAATGGCTGAAGCTAAGATTAACATGGATAAAGAGAATAAGAGACAGAAAAGCGCATTTAATGGCAAAGCAACTGGTTCAGAAAAGCTGAGAGGGCCTCCTGTCAATGGTAACAGGCATCCAAACATTGATTCTTTCCCTGTCAGAAGTGATGATACACTTCAGAAGAACCAAGCTTATGTTACCATCAATGTTCCAGATCCTGATTTTCATAACTTTGATTTGGACAGAGATGAAAATTCCTTTGCGGAAGACCAGGTGTGGGCTGCGTATGATGATGATGATGGAATGCCTCGATATTATGCTAGAATTCACAAGGTGATCTCTATAAAGCCATTTAAAATGCGGATCAGTTGGCTTAATTCTCGAAGCAACAGCGAATTGGGCCCAATAGATTGGGTGGGCTCTGGTTTTTACAAGACTTGTGGGGATTTCAGAACTGGCAAGCATGAAATATCTGAATCATTAAATTCTTTCTCTCACAAGGTTAGGTGGACAAAAGGCACGAGAGGTGTTGTTCGCATCTTTCCTGGAAAGGGGGAAGTGTGGGCTCTTTACAGGGACTGGTCTCCTGATTGGAATGAACACACCCCGGATGAAGTGATACACAAGTATGATATGGTGGAGGTTCTCGAAGATTTCAATGAAGAACAGGGCATCATGGTTACCCCACTTGTTAAGGTTGCTGGTTTTAGGACTGTGTTTCAAAGGCATGCGGATCGTGTTCAGGAGAGGAGGATTCTTAAAGAAGAAATGTTTCGATTCTCTCATCAGGTTCCTAATTACTTGTTAACAGGCCAAGAAGCTCAGAATGCTCCAAAGGGTTGTCGAGAGTTGGATCCAGCCGCTACTCCTTTAGACCTCCTTCAGATAACGACAGAAGCTAATGAGACATCAGATAATGCTTAG	2094	0.4183	MMECNKDEAVRAKEIAERKFSEREYVGAKKFALKAQNLYPDLEDITQLLTTIDIYISAENKVSGEMDWYGILGVSPFADEETVRKQYRKLALTLHPDKNKSLGAEGAFKLVSEAWSLLSDKTKRLEYNQKRSLKGFQHNTSNHVASKSDAPSANGFYNLKKNVTSNVRTGNNNGRAPSTAVPPSHKKADTFWTICNRCRTHYEYLRIYLNHTLLCPNCNEAFVAVERGPPPNVFKPPNWSSHQQRHQNSQHSAGSNNTNFQWGSHNRMASFGSTDGSTSVAAQAASVVQQASEKVRREGSFHKAEKPMKKRRTDDIRINGYQGYMANHMTGGHGAAGLGSFSESGKANVEAERNHGFSGLPGKHYSTRELSMFEMRNMLMDKSRNEIIKKLQEWKSMAEAKINMDKENKRQKSAFNGKATGSEKLRGPPVNGNRHPNIDSFPVRSDDTLQKNQAYVTINVPDPDFHNFDLDRDENSFAEDQVWAAYDDDDGMPRYYARIHKVISIKPFKMRISWLNSRSNSELGPIDWVGSGFYKTCGDFRTGKHEISESLNSFSHKVRWTKGTRGVVRIFPGKGEVWALYRDWSPDWNEHTPDEVIHKYDMVEVLEDFNEEQGIMVTPLVKVAGFRTVFQRHADRVQERRILKEEMFRFSHQVPNYLLTGQEAQNAPKGCRELDPAATPLDLLQITTEANETSDNA*	698

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac9g01790	697	MobiDBLite	consensus disorder prediction	237	255	-	-
	Phac9g01790	697	ProSiteProfiles	dnaJ domain profile.	67	131	IPR001623	-
	Phac9g01790	697	ProSitePatterns	Nt-dnaJ domain signature.	108	127	IPR018253	-
	Phac9g01790	697	MobiDBLite	consensus disorder prediction	136	179	-	-
	Phac9g01790	697	MobiDBLite	consensus disorder prediction	409	443	-	-
	Phac9g01790	697	SMART	dnaj_3	66	123	IPR001623	-
	Phac9g01790	697	MobiDBLite	consensus disorder prediction	291	311	-	-
	Phac9g01790	697	Gene3D	DnaJ domain	64	175	IPR036869	-
	Phac9g01790	697	MobiDBLite	consensus disorder prediction	235	255	-	-
	Phac9g01790	697	Pfam	DnaJ domain	67	128	IPR001623	-
	Phac9g01790	697	SUPERFAMILY	Chaperone J-domain	58	127	IPR036869	-
	Phac9g01790	697	CDD	DnaJ	67	120	IPR001623	-
	Phac9g01790	697	MobiDBLite	consensus disorder prediction	295	311	-	-
	Phac9g01790	697	Pfam	Domain of unknown function (DUF3444)	457	663	IPR024593	-
	Phac9g01790	697	PANTHER	BNAC03G44070D PROTEIN	2	680	-	-
	Phac9g01790	697	PRINTS	DnaJ domain signature	103	123	IPR001623	-
	Phac9g01790	697	PRINTS	DnaJ domain signature	69	87	IPR001623	-
	Phac9g01790	697	PRINTS	DnaJ domain signature	87	102	IPR001623	-
	Phac9g01790	697	MobiDBLite	consensus disorder prediction	136	185	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac9g01790	Phac-Chr9	14490435	14495397	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac9g01790	5	230	SUVH1 or 3-interacting DNAJ domain-containing protein superfamily	AT2G01710	31.197	5.66e-30	120

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac9g01790	-		-	gmx:100814722	1295.8