Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g01676 ATGGCAAGTGGGTTTGGGGAATCAACTGGGAGGTCACCCCCAAGCCCTTCATACTTCAACAACAATAATAATAGCAATGATGCTGGGAATTTTGAGTGCAACATTTGCTTTGAATTAGCGCAAGACCCCATAATTACTTTGTGCGGTCATCTTTTCTGCTGGCCTTGTCTTTACAAATGGCTTCACTTTCACTCACAGTCACGAGAATGCCCGGTTTGCAAGGCCCTCGTGGAAGAGGAGAAGCTGGTTCCCTTGTATGGGAGAGGAAAGACCTCCACTGATCCAAGATCAAAGTCTATTCCGGGCATGAATATCCCACATCGTCCGGCCGGTCAGAGGCCTGAAACTGCTCCTCCACCGGAAACAAATAATTTTCATCCACATGGGTTTGGATTTATGAGTGGCTTGGGAGGATTTGCACCACCGCCAATGGCAACAACAAGATTTGGGAATTTCGGATTGCCTGCAGCTTTTGGTGGTTTTATACCGTCCTTATTCAACTTTCAGTTGCATGGGTTTCACGATGGGGCCTTGTATCGGGGAGCCTCTGGTTTTCCTCATGGATTTTCTAATACATTTCATGGTGTTCATGCTCACGGATATCCTCTTCGCACTCATCAAAGTCAGCAAGACTATTATTTGAAGAAGCTGCTTCTAGTTGTTGTTTTCTGTGTTCTTCTTGCTTTTATTTGGCAATAG 699 0.4549 MASGFGESTGRSPPSPSYFNNNNNSNDAGNFECNICFELAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKALVEEEKLVPLYGRGKTSTDPRSKSIPGMNIPHRPAGQRPETAPPPETNNFHPHGFGFMSGLGGFAPPPMATTRFGNFGLPAAFGGFIPSLFNFQLHGFHDGALYRGASGFPHGFSNTFHGVHAHGYPLRTHQSQQDYYLKKLLLVVVFCVLLAFIWQ* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g01676 232 MobiDBLite consensus disorder prediction 1 21 - -
Phac9g01676 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 87 IPR013083 -
Phac9g01676 232 MobiDBLite consensus disorder prediction 87 118 - -
Phac9g01676 232 SMART ring_2 33 73 IPR001841 -
Phac9g01676 232 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 16 87 - -
Phac9g01676 232 ProSiteProfiles Zinc finger RING-type profile. 33 74 IPR001841 -
Phac9g01676 232 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 20 227 IPR045103 GO:0005783|GO:0006511|GO:0061630
Phac9g01676 232 SUPERFAMILY RING/U-box 30 86 - -
Phac9g01676 232 ProSitePatterns Zinc finger RING-type signature. 48 57 IPR017907 -
Phac9g01676 232 CDD RING-HC_AtRMA-like 31 75 - -
Phac9g01676 232 Pfam Zinc finger, C3HC4 type (RING finger) 33 73 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g01676 Phac-Chr9 13736575 13739152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g01676 31 215 C3H Transcription Factor Family AT1G19310 63.731 1.34e-83 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g01676 K10666 - gmx:100527488 427.943