Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phac9g01646 | ATGGCTATCCGGGTTACCTTCTCCTTCTCGGGCTACGTAGCCCAAAATCTCGTCTCCTCCGCCGGCGCCCGCGTCGCCAATTCGCGATGCGTCCAAGAATGCTGGATCCGCACGCGCCTCTTCGGCGCAACCCAGAAAACGGAACTAGATTCTTCCGCCGGCGGAGTCCGAAATTTCGCTAGGCCCAACTGCTGGGCCCAGTCTACTTACTCCACCCTCGCCGAAGAGTTTATCGGCGACGGCTGCAAGAGCCCAATTATATTGGGCCTGATTTCGATTATGAAGTCAACGGCGGGTGTGTCTGGGTCATCCGCCGCGGCTGCGGGTATTTTCGGTATTTCGCCCTTCAAAACAAGTTCCATTATTCCCTTCTTGCCCGGTTCGAAGTGGCTTCCCTGCAACGAGTCCGTTCCCAACCCTACTTCGTGGGAGGTCGATAAAGGTGGCACGAAACGCGCCGTTGAGAACGATGTACCCAGTTTTGCGAAGACTAGTTGGCTTTCGCGGCTTCTTAACGTGTCTTCTGAAGATGCGAGGGCTGCGTTCACTGCCATTACCGTTAGTTTGCTGTTTAAGTCGTCTTTGGCTGAACCTAGATCCATTCCCTCCTTATCTATGTACCCTACTCTTGAAGTGGGTGACCGTGTTTTAACCGAGAAGGTTTCGTACTTCTTTAGGAAGCCTGACGTTTCGGATATAGTGATTTTTACAGCGCCTCGTTGTTTGGAAAAGTTTGGTTTTACTTCGTCTGATGTATTTATAAAGAGGATTGTGGCTAAGGCAGGGGATTGTGTTGAGGTTCGAGATGGGAAACTACTGGTAAATGGTGTTGCTGAAGAACAGGAATTTGTATTAGAGCCTCTAGCTTATGAGATGGATCCAATGGTTGTGCCAGAAGGATATGTGTTTGTGATGGGAGATAATCGGAATAACAGTCTTGATTCTCACAACTGGGGACCCCTCCCAATCGAGAACATTGTTGGTAGATCCATGTTTAGGTACTGGCCTCCATCCAAGGTATCTGACACTGACACCCTTCGTAAACTGCCTCCTAAGAACAAATCTGTGGCAATTTCTTGA | 1080 | 0.4981 | MAIRVTFSFSGYVAQNLVSSAGARVANSRCVQECWIRTRLFGATQKTELDSSAGGVRNFARPNCWAQSTYSTLAEEFIGDGCKSPIILGLISIMKSTAGVSGSSAAAAGIFGISPFKTSSIIPFLPGSKWLPCNESVPNPTSWEVDKGGTKRAVENDVPSFAKTSWLSRLLNVSSEDARAAFTAITVSLLFKSSLAEPRSIPSLSMYPTLEVGDRVLTEKVSYFFRKPDVSDIVIFTAPRCLEKFGFTSSDVFIKRIVAKAGDCVEVRDGKLLVNGVAEEQEFVLEPLAYEMDPMVVPEGYVFVMGDNRNNSLDSHNWGPLPIENIVGRSMFRYWPPSKVSDTDTLRKLPPKNKSVAIS* | 360 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phac9g01646 | 359 | Gene3D | Umud Fragment, subunit A | 191 | 348 | - | - | |
| Phac9g01646 | 359 | NCBIfam | signal peptidase I | 181 | 336 | IPR000223 | GO:0006508|GO:0008236|GO:0016020 | |
| Phac9g01646 | 359 | ProSitePatterns | Signal peptidases I signature 3. | 302 | 315 | IPR019758 | GO:0004252|GO:0016020 | |
| Phac9g01646 | 359 | PRINTS | Bacterial leader peptidase 1 (S26A) family signature | 194 | 210 | IPR000223 | GO:0006508|GO:0008236|GO:0016020 | |
| Phac9g01646 | 359 | PRINTS | Bacterial leader peptidase 1 (S26A) family signature | 297 | 316 | IPR000223 | GO:0006508|GO:0008236|GO:0016020 | |
| Phac9g01646 | 359 | PRINTS | Bacterial leader peptidase 1 (S26A) family signature | 253 | 265 | IPR000223 | GO:0006508|GO:0008236|GO:0016020 | |
| Phac9g01646 | 359 | FunFam | Peptidase/ serine-type peptidase | 203 | 334 | - | - | |
| Phac9g01646 | 359 | SUPERFAMILY | LexA/Signal peptidase | 195 | 340 | IPR036286 | - | |
| Phac9g01646 | 359 | Pfam | Signal peptidase, peptidase S26 | 178 | 335 | IPR019533 | GO:0004252|GO:0006465 | |
| Phac9g01646 | 359 | ProSitePatterns | Signal peptidases I serine active site. | 203 | 210 | IPR019756 | GO:0004252|GO:0016020 | |
| Phac9g01646 | 359 | CDD | S26_SPase_I | 197 | 329 | IPR019533 | GO:0004252|GO:0006465 | |
| Phac9g01646 | 359 | PANTHER | SIGNAL PEPTIDASE I | 141 | 342 | IPR000223 | GO:0006508|GO:0008236|GO:0016020 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phac9g01646 | Phac-Chr9 | 13521656 | 13524238 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Phac9g01646 | 206 | 336 | MADS-box Gene Family | AT1G29960 | 34.586 | 3.43e-15 | 69.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Phac9g01646 | K03100 | - | gmx:100817525 | 621.698 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Phac9g01646 | 9 | 13521656 | 13524238 | Phac9g01646 | 9 | 13521656 | 13524238 | ECH |