Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g01624 ATGCAACCAACATCGAACGGCTCTGATTCGCAAGCCACGGAGCAGAACCAGCAGACCACGCCGCCGCCACCGCCGCAGCCTGTGCCCGTCCCGCCGCAGTGGCTCCCGATGCAGTACCCCGCGGCTGCCATGGTAATGCAGCACCACATGATGCCGCCTCAACATTATGCCGCGCCGCCGCCGCCACCGCAGCCCTACGTCGCCTACCACCAGTACCAGCAGCAGCTCCCGCACGTGCCGCACGCGCACCATCAGGGATCCAGCGCCGAGAACAAAACCGTATGGGTCGGGGATTTGCATCACTGGATGGACGAAAATTATCTCCACCGCTGTTTCGCCTCGACCGGCGAGATTTCTTCCATTAAGGTTATTCGAAATAAGCAGACTGGTCTATCAGAGGGTTATGGATTTGTGGAATTTTATTCGCATGGCACAGCTGAGAAAGTTTTGCAGAATTATGCTGGGATATTAATGCCTAACACAGAGCAACCTTTTCGCCTGAACTGGGCATCATTTAGCACAGGAGACAAGCGTTCAGATAATGTTCCTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCTGATGTTACAGATAGCATGTTGCATGAAACTTTTTCTAATAGATACCCATCTGTTAAAGCTGCAAAGGTTGTTTTTGATGCCAACACTGGCCGATCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATAACGAGAGGTCTCAGGCTATGACTGAAATGAATGGTGTTTACTGCTCTAGCAGGCCTATGCGTATTGGTGCTGCAACTCCTAGGAAGACCTCTGGCTATCAACAAGGAAGTCAGTCAAATGGCACATCCAACCAATCTGAAGCTGATTCTACGAACACAACTATATTTGTCGGAGGTCTTGACCCTAATGTTACTGCTGAAGATCTTAGGCAGCCATTCTCCCAGTATGATAACATGGTTTTTTATTACAATGACCATTCCAGAAATAATGCTGAAGAGGCATTGCAGAAGCTAAATGGGACAACTATTGGCAAACAAATGGTTCGCCTTTCGTGGGGCCGCAATCCGGCTAATAAGCAGTTTAGAGGAGATTTCGGCAGTCCTTGGAGTGGGGCGTATTACGGGGGACCTGTTTATGATGGTTATGGGTATGCTTTACCACCTCCTCATGACCCCAGTATATATGCTGCTGCTTATGGGGCATACCCTATTTATGGAGGACACCAGCAGCAAGTAAGCTGA 1233 0.4923 MQPTSNGSDSQATEQNQQTTPPPPPQPVPVPPQWLPMQYPAAAMVMQHHMMPPQHYAAPPPPPQPYVAYHQYQQQLPHVPHAHHQGSSAENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHGTAEKVLQNYAGILMPNTEQPFRLNWASFSTGDKRSDNVPDLSIFVGDLAADVTDSMLHETFSNRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKTSGYQQGSQSNGTSNQSEADSTNTTIFVGGLDPNVTAEDLRQPFSQYDNMVFYYNDHSRNNAEEALQKLNGTTIGKQMVRLSWGRNPANKQFRGDFGSPWSGAYYGGPVYDGYGYALPPPHDPSIYAAAYGAYPIYGGHQQQVS* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g01624 410 Gene3D - 267 382 IPR012677 -
Phac9g01624 410 MobiDBLite consensus disorder prediction 1 17 - -
Phac9g01624 410 SMART rrm1_1 291 348 IPR000504 GO:0003723
Phac9g01624 410 SMART rrm1_1 186 260 IPR000504 GO:0003723
Phac9g01624 410 SMART rrm1_1 93 168 IPR000504 GO:0003723
Phac9g01624 410 MobiDBLite consensus disorder prediction 265 293 - -
Phac9g01624 410 MobiDBLite consensus disorder prediction 1 34 - -
Phac9g01624 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 161 IPR000504 GO:0003723
Phac9g01624 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 256 IPR000504 GO:0003723
Phac9g01624 410 MobiDBLite consensus disorder prediction 18 34 - -
Phac9g01624 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 172 IPR000504 GO:0003723
Phac9g01624 410 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 82 356 - -
Phac9g01624 410 CDD RRM2_SECp43_like 184 263 - -
Phac9g01624 410 CDD RRM1_SECp43_like 93 173 - -
Phac9g01624 410 SUPERFAMILY RNA-binding domain, RBD 184 354 IPR035979 GO:0003676
Phac9g01624 410 FunFam Polyadenylate-binding protein RBP47C isoform A 91 171 - -
Phac9g01624 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 264 IPR000504 GO:0003723
Phac9g01624 410 SUPERFAMILY RNA-binding domain, RBD 60 172 IPR035979 GO:0003676
Phac9g01624 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 352 IPR000504 GO:0003723
Phac9g01624 410 MobiDBLite consensus disorder prediction 261 293 - -
Phac9g01624 410 FunFam Polyadenylate-binding protein RBP47C isoform A 184 260 - -
Phac9g01624 410 Gene3D - 91 171 IPR012677 -
Phac9g01624 410 Gene3D - 184 260 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g01624 Phac-Chr9 13359668 13365495 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g01624 91 357 Eukaryotic Initiation Factors Gene Family AT1G71770 23.944 8.68e-21 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g01624 - - gmx:100777830 674.085