Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g01623 ATGCAACCAACATCGAACGGCTCTGATTCGCAAGCCACGGAGCAGAACCAGCAGACCACGCCGCCGCCACCGCCGCAGCCTGTGCCCGTCCCGCCGCAGTGGCTCCCGATGCAGTACCCCGCGGCTGCCATGGTAATGCAGCACCACATGATGCCGCCTCAACATTATGCCGCGCCGCCGCCGCCACCGCAGCCCTACGTCGCCTACCACCAGTACCAGCAGCAGCTCCCGCACGTGCCGCACGCGCACCATCAGGGATCCAGCGCCGAGAACAAAACCGTATGGGTCGGGGATTTGCATCACTGGATGGACGAAAATTATCTCCACCGCTGTTTCGCCTCGACCGGCGAGATTTCTTCCATTAAGGTTATTCGAAATAAGCAGACTGGTCTATCAGAGGGTTATGGATTTGTGGAATTTTATTCGCATGGCACAGCTGAGAAAGTTTTGCAGAATTATGCTGGGATATTAATGCCTAACACAGAGCAACCTTTTCGCCTGAACTGGGCATCATTTAGCACAGGAGACAAGCGTTCAGATAATGTTCCTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCTGATGTTACAGATAGCATGTTGCATGAAACTTTTTCTAATAGATACCCATCTGTTAAAGCTGCAAAGGTTGTTTTTGATGCCAACACTGGCCGATCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATAACGAGAGGTCTCAGGCTATGACTGAAATGAATGGTGTTTACTGCTCTAGCAGGCCTATGCGTATTGGTGCTGCAACTCCTAGGAAGACCTCTGGCTATCAACAAGGAAGTCAGTCAAATGGCACATCCAACCAATCTGAAGCTGATTCTACGAACACAACTATATTTGTCGGAGGTCTTGACCCTAATGTTACTGCTGAAGATCTTAGGCAGCCATTCTCCCAGTATGGTGAGATAGTCTCTGTTAAGATACCTGTTGGAAAAGGTTGTGGTTTTGTACAATTTGCAATCAGGTAG 1008 0.495 MQPTSNGSDSQATEQNQQTTPPPPPQPVPVPPQWLPMQYPAAAMVMQHHMMPPQHYAAPPPPPQPYVAYHQYQQQLPHVPHAHHQGSSAENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHGTAEKVLQNYAGILMPNTEQPFRLNWASFSTGDKRSDNVPDLSIFVGDLAADVTDSMLHETFSNRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKTSGYQQGSQSNGTSNQSEADSTNTTIFVGGLDPNVTAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFAIR* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g01623 335 MobiDBLite consensus disorder prediction 1 17 - -
Phac9g01623 335 MobiDBLite consensus disorder prediction 265 293 - -
Phac9g01623 335 SMART rrm1_1 186 260 IPR000504 GO:0003723
Phac9g01623 335 SMART rrm1_1 291 335 IPR000504 GO:0003723
Phac9g01623 335 SMART rrm1_1 93 168 IPR000504 GO:0003723
Phac9g01623 335 MobiDBLite consensus disorder prediction 1 34 - -
Phac9g01623 335 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 335 IPR000504 GO:0003723
Phac9g01623 335 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 161 IPR000504 GO:0003723
Phac9g01623 335 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 256 IPR000504 GO:0003723
Phac9g01623 335 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 333 IPR000504 GO:0003723
Phac9g01623 335 Gene3D - 261 335 IPR012677 -
Phac9g01623 335 MobiDBLite consensus disorder prediction 18 34 - -
Phac9g01623 335 Gene3D - 91 171 IPR012677 -
Phac9g01623 335 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 172 IPR000504 GO:0003723
Phac9g01623 335 CDD RRM2_SECp43_like 184 263 - -
Phac9g01623 335 CDD RRM1_SECp43_like 93 173 - -
Phac9g01623 335 FunFam Polyadenylate-binding protein RBP47C isoform A 184 260 - -
Phac9g01623 335 SUPERFAMILY RNA-binding domain, RBD 184 332 IPR035979 GO:0003676
Phac9g01623 335 Gene3D - 184 260 IPR012677 -
Phac9g01623 335 SUPERFAMILY RNA-binding domain, RBD 60 172 IPR035979 GO:0003676
Phac9g01623 335 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 264 IPR000504 GO:0003723
Phac9g01623 335 MobiDBLite consensus disorder prediction 261 293 - -
Phac9g01623 335 FunFam Polyadenylate-binding protein RBP47C isoform A 91 171 - -
Phac9g01623 335 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 82 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g01623 Phac-Chr9 13359668 13365495 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g01623 94 333 Eukaryotic Initiation Factors Gene Family AT2G23350 30.279 2.15e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g01623 - - gmx:100785454 556.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac9g01623 9 13359668 13365495 Phac9g01623 9 13359668 13365495 ECH