Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Phac9g01622 | ATGCAACCAACATCGAACGGCTCTGATTCGCAAGCCACGGAGCAGAACCAGCAGACCACGCCGCCGCCACCGCCGCAGCCTGTGCCCGTCCCGCCGCAGTGGCTCCCGATGCAGTACCCCGCGGCTGCCATGGTAATGCAGCACCACATGATGCCGCCTCAACATTATGCCGCGCCGCCGCCGCCACCGCAGCCCTACGTCGCCTACCACCAGTACCAGCAGCAGCTCCCGCACGTGCCGCACGCGCACCATCAGGGATCCAGCGCCGAGAACAAAACCGTATGGGTCGGGGATTTGCATCACTGGATGGACGAAAATTATCTCCACCGCTGTTTCGCCTCGACCGGCGAGATTTCTTCCATTAAGGTTATTCGAAATAAGCAGACTGGTCTATCAGAGGGTTATGGATTTGTGGAATTTTATTCGCATGGCACAGCTGAGAAAGTTTTGCAGAATTATGCTGGGATATTAATGCCTAACACAGAGCAACCTTTTCGCCTGAACTGGGCATCATTTAGCACAGGAGACAAGCGTTCAGATAATGTTCCTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCTGATGTTACAGATAGCATGTTGCATGAAACTTTTTCTAATAGATACCCATCTGTTAAAGCTGCAAAGGTTGTTTTTGATGCCAACACTGGCCGATCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATAACGAGAGGTCTCAGGCTATGACTGAAATGAATGGTGTTTACTGCTCTAGCAGGCCTATGCGTATTGGTGCTGCAACTCCTAGGAAGACCTCTGGCTATCAACAAGGAAGTCAGTCAAATGGCACATCCAACCAATCTGAAGCTGATTCTACGAACACAACTATATTTGTCGGAGGTCTTGACCCTAATGTTACTGCTGAAGATCTTAGGCAGCCATTCTCCCAGTATGGTGAGATAGTCTCTGTTAAGATACCTGTTGGAAAAGGTTGTGGTTTTGTACAATTTGCAATCAGAAATAATGCTGAAGAGGCATTGCAGAAGCTAAATGGGACAACTATTGGCAAACAAATGGTTCGCCTTTCGTGGGGCCGCAATCCGGCTAATAAGCAGTTTAGAGGAGATTTCGGCAGTCCTTGGAGTGGGGCGTATTACGGGGGACCTGTTTATGATGGTTATGGGTATGCTTTACCACCTCCTCATGACCCCAGTATATATGCTGCTGCTTATGGGGCATACCCTATTTATGGAGGACACCAGCAGCAAGTAAGCTGA | 1263 | 0.4917 | MQPTSNGSDSQATEQNQQTTPPPPPQPVPVPPQWLPMQYPAAAMVMQHHMMPPQHYAAPPPPPQPYVAYHQYQQQLPHVPHAHHQGSSAENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHGTAEKVLQNYAGILMPNTEQPFRLNWASFSTGDKRSDNVPDLSIFVGDLAADVTDSMLHETFSNRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKTSGYQQGSQSNGTSNQSEADSTNTTIFVGGLDPNVTAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFAIRNNAEEALQKLNGTTIGKQMVRLSWGRNPANKQFRGDFGSPWSGAYYGGPVYDGYGYALPPPHDPSIYAAAYGAYPIYGGHQQQVS* | 421 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Phac9g01622 | 420 | SUPERFAMILY | RNA-binding domain, RBD | 168 | 279 | IPR035979 | GO:0003676 | |
Phac9g01622 | 420 | Gene3D | - | 91 | 171 | IPR012677 | - | |
Phac9g01622 | 420 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 82 | 366 | - | - | |
Phac9g01622 | 420 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Phac9g01622 | 420 | MobiDBLite | consensus disorder prediction | 265 | 293 | - | - | |
Phac9g01622 | 420 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
Phac9g01622 | 420 | FunFam | Polyadenylate-binding protein RBP47 | 275 | 392 | - | - | |
Phac9g01622 | 420 | MobiDBLite | consensus disorder prediction | 18 | 34 | - | - | |
Phac9g01622 | 420 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 92 | 172 | IPR000504 | GO:0003723 | |
Phac9g01622 | 420 | CDD | RRM2_SECp43_like | 184 | 263 | - | - | |
Phac9g01622 | 420 | CDD | RRM1_SECp43_like | 93 | 173 | - | - | |
Phac9g01622 | 420 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 290 | 362 | IPR000504 | GO:0003723 | |
Phac9g01622 | 420 | FunFam | Polyadenylate-binding protein RBP47C isoform A | 91 | 171 | - | - | |
Phac9g01622 | 420 | Gene3D | - | 275 | 392 | IPR012677 | - | |
Phac9g01622 | 420 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 185 | 264 | IPR000504 | GO:0003723 | |
Phac9g01622 | 420 | FunFam | Polyadenylate-binding protein RBP47C isoform A | 184 | 260 | - | - | |
Phac9g01622 | 420 | Gene3D | - | 172 | 274 | IPR012677 | - | |
Phac9g01622 | 420 | MobiDBLite | consensus disorder prediction | 261 | 293 | - | - | |
Phac9g01622 | 420 | SUPERFAMILY | RNA-binding domain, RBD | 60 | 173 | IPR035979 | GO:0003676 | |
Phac9g01622 | 420 | SUPERFAMILY | RNA-binding domain, RBD | 279 | 390 | IPR035979 | GO:0003676 | |
Phac9g01622 | 420 | SMART | rrm1_1 | 186 | 260 | IPR000504 | GO:0003723 | |
Phac9g01622 | 420 | SMART | rrm1_1 | 93 | 168 | IPR000504 | GO:0003723 | |
Phac9g01622 | 420 | SMART | rrm1_1 | 291 | 358 | IPR000504 | GO:0003723 | |
Phac9g01622 | 420 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 94 | 161 | IPR000504 | GO:0003723 | |
Phac9g01622 | 420 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 292 | 353 | IPR000504 | GO:0003723 | |
Phac9g01622 | 420 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 187 | 256 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Phac9g01622 | Phac-Chr9 | 13359446 | 13365495 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Phac9g01622 | 290 | 359 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 31.579 | 1.11e-06 | 48.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Phac9g01622 | - | - | gmx:100777830 | 714.146 |