Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g01559 ATGGCGCAAATTCCTGACAAACATAGGAGTGAACCGACGGTTACCGGTTCCAACATGTCGTTGTTCGTCGGGGATCTTGACCAGAACATCAACGAACAGCAGCTCTATGATCACTTCAATGACGTTGCCGAAGTTGTTTCCGTTCGAATTTGCAAGGACTATCAAACTCAGACCTCCCTTGGTTACGGCTACGTCAATTTCAGTAGTGCTCAGCATGCCGCAAAAGCGTTGGATGTGCTAAATTTCACTACGTTGAACGGGAAACCCATTAGGGTAATGTACTCTATTCGGGACCCCAGTTTTCGTAATAGTGGTACAGCTAACGTTTATATAAAGAATTTGGATAAGTCAATCGATGACAAGTGTCTATTCGATGTCTTTTCGTCTTTTGGGAATATTCTATCTCTCAGGGTTGCGAAGGATGCTTCTGGCGAGTCTAGAGGCTATGGTTTTGTGCAGTTTGAGACGGAAGCATCTGCAAAAGAAGCGATTCAAAAGTTAAACGGCACGCTGCTCAATCATAAACAGCTCTATGTGGGTCCTTTCGTGCGAAAGGAGGATAGAGAGAGTTTTAATGGTACTGACGCGAAGTTTAATAATGTTTATGTAAGTAACCTGTCAAAGACAATAACGGATGCTGACCTGCAGATAATTTTTGGAGAATATGGGCTTATTACTAGTGCTGTAGTGATGAAAGATGTAGTTGGTGAATCAAAAGGTTTTGGTTTTGTCAATTTTGCAAATGCAGACGATGCTGCTAAAGCCCGGGACGGTCTTGATGGCATTTTTGTTTGTGGTAAGAAGTGGTACGTTGGAAGAGCCATGAGAAAATCTGAAAGGGAGCTTGATGTGAAAGGGGCACTGAATAGGAGGCCTTACTTTGCTAAGGAAGATACAAACTTGTATATAAAGAACTTGGACGATAGTATTGGTGATGAAGAACTCAAGGAATATTTCTCTGAGTTTGGTACAATAACCTCATCGTGTGTTATGAGAGATTCAAATGGATTTAGTAAAGGATCTGGATTTGTTGCATATTCAGATAAGGAGGCAGCAAATCGGGCTCTTGAATCGATGAATGGTCAAATGGTTGCTGGCAAACCTCTCTATGTTGCCATTGCACAGACAAAGGAAGAGAGAAAAGCAAGGTTACAGGCAGTGTTTTCAGAACCTAGGGCTTCTCCAACAGTCCCTAATCTTGCACCTCAGCATCCAATGTACACTATAAGGGCTCCTGGGCTAGAACCACCATTTTTGCATAGGCAAACACATCCAGACTTCATAACTCAAGCTTCAATTAATTTGCAGCAGCATCTTGCTCGCGGAATGACGCCAACTTGTCCTCCAATGCCAAACTTCTATGCAGTTCATGAGCACCCGCAGCCAGGAGGATACCAACAAGGTGGTCCTGTGCAACCGCTCATGTTACACCCACAGATGCTTCCAAGTGGAAATTTCTATCAAGGTCCTCCCGGCCCCAACATGCAAAATATTCATCCCGCAGGAGTAGCGGGAGAAATGATCCTTTTTGGCTGTGTTCCGCCAGTGCCACTTCAGGCCTTGGCATCAGCCGTTGCCAATGCTAATCCAGAACTGCAGAGGATTCTGCTTGGTGAAACTTTATACCCGTTAGTAGAAAAGCTGGAGCCTGATGCGGCACCAAGGGTTACTGGTATGCTTTTAGAGATGGACCACCCTGAGGTGTTACATCTGATTGAGTCGCCACATGCTCTCTCGGAAAAAGTTGCGGAGGCCATGGCTGCATTGAGACAAGTTGAAGAACAACAATCAAGCTGCCCAGCTGATGAACTTGGTTTTGTCTCTCCCGACGACGATCCATGGATTTAG 1848 0.4475 MAQIPDKHRSEPTVTGSNMSLFVGDLDQNINEQQLYDHFNDVAEVVSVRICKDYQTQTSLGYGYVNFSSAQHAAKALDVLNFTTLNGKPIRVMYSIRDPSFRNSGTANVYIKNLDKSIDDKCLFDVFSSFGNILSLRVAKDASGESRGYGFVQFETEASAKEAIQKLNGTLLNHKQLYVGPFVRKEDRESFNGTDAKFNNVYVSNLSKTITDADLQIIFGEYGLITSAVVMKDVVGESKGFGFVNFANADDAAKARDGLDGIFVCGKKWYVGRAMRKSERELDVKGALNRRPYFAKEDTNLYIKNLDDSIGDEELKEYFSEFGTITSSCVMRDSNGFSKGSGFVAYSDKEAANRALESMNGQMVAGKPLYVAIAQTKEERKARLQAVFSEPRASPTVPNLAPQHPMYTIRAPGLEPPFLHRQTHPDFITQASINLQQHLARGMTPTCPPMPNFYAVHEHPQPGGYQQGGPVQPLMLHPQMLPSGNFYQGPPGPNMQNIHPAGVAGEMILFGCVPPVPLQALASAVANANPELQRILLGETLYPLVEKLEPDAAPRVTGMLLEMDHPEVLHLIESPHALSEKVAEAMAALRQVEEQQSSCPADELGFVSPDDDPWI* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g01559 615 SUPERFAMILY RNA-binding domain, RBD 199 376 IPR035979 GO:0003676
Phac9g01559 615 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 177 IPR000504 GO:0003723
Phac9g01559 615 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 269 IPR000504 GO:0003723
Phac9g01559 615 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 91 IPR000504 GO:0003723
Phac9g01559 615 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 301 369 IPR000504 GO:0003723
Phac9g01559 615 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 299 376 IPR000504 GO:0003723
Phac9g01559 615 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 20 590 IPR006515 GO:0003723
Phac9g01559 615 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 517 594 IPR002004 GO:0003723
Phac9g01559 615 PANTHER RNA BINDING PROTEIN 18 81 - -
Phac9g01559 615 SUPERFAMILY RNA-binding domain, RBD 19 188 IPR035979 GO:0003676
Phac9g01559 615 Gene3D - 290 385 IPR012677 -
Phac9g01559 615 Gene3D - 515 595 - -
Phac9g01559 615 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 97 IPR000504 GO:0003723
Phac9g01559 615 CDD RRM2_I_PABPs 105 181 IPR045305 -
Phac9g01559 615 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 179 IPR000504 GO:0003723
Phac9g01559 615 SMART poly_2 529 592 IPR002004 GO:0003723
Phac9g01559 615 Pfam Poly-adenylate binding protein, unique domain 525 589 IPR002004 GO:0003723
Phac9g01559 615 Gene3D - 2 99 IPR012677 -
Phac9g01559 615 Gene3D - 100 187 IPR012677 -
Phac9g01559 615 SUPERFAMILY PABC (PABP) domain 473 600 IPR036053 GO:0003723
Phac9g01559 615 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 276 IPR000504 GO:0003723
Phac9g01559 615 MobiDBLite consensus disorder prediction 594 615 - -
Phac9g01559 615 SMART rrm2_1 108 180 IPR003954 GO:0003676
Phac9g01559 615 SMART rrm2_1 300 372 IPR003954 GO:0003676
Phac9g01559 615 Gene3D - 188 289 IPR012677 -
Phac9g01559 615 SMART rrm1_1 300 372 IPR000504 GO:0003723
Phac9g01559 615 SMART rrm1_1 20 93 IPR000504 GO:0003723
Phac9g01559 615 SMART rrm1_1 200 272 IPR000504 GO:0003723
Phac9g01559 615 SMART rrm1_1 108 180 IPR000504 GO:0003723
Phac9g01559 615 FunFam Polyadenylate-binding protein 101 188 - -
Phac9g01559 615 FunFam Poly(A) binding protein cytoplasmic 1 like 293 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g01559 Phac-Chr9 12731006 12734089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g01559 20 612 Eukaryotic Initiation Factors Gene Family AT1G49760 47.040 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g01559 K13126 - gmx:100778879 708.753