Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g01513 ATGGGGAGAGTGAAGCTTCAGATCAAGAAGATTGAGAACACCACAAACAGGCAAGTCACTTTCTCCAAGAGGAGGAATGGACTCATCAAGAAAGCTTACGAACTTTCTGTTCTTTGTGATGTTGATGTGGCTCTCATCATGTTTTCCCCATCTGGAAGACCCAGTTTCTTCTCTGGCAACAAAAGCATTGAAGAAATTCTAGAACGATATGTTAACCTTCAGAGTGGTGATCACGGAAGCACGTTCAGAAGTTGCTTGGAGGTTCGAAGAGAAATTTTTACTTGCAAGTCTCAATTGAAAGAGATGGAAAAGCGCCTAAGGATATTTGAAGGTGATCCTTCCGAGATCACAACGCTGAGAGACGCTGAATATCGTGAATATGTCCTTCGTCAAACTCTCAAACAAGTGCAATTGCGAAAGTGTGTTTTGGAGGAGAATAATTCCGAAGCCTCTCATTCCCCACAGGTACATGGTGCAAAAAGTGTAGATGTAAATAGTTTTGTCACCAGCGCCTCAAAGAACCGAGTAGACTGGTTTCCACATGGAAATCCACATGCTCGAACTCTGAACTTTGAGAATGTTTATGACCCTGCTCCTACCAGAGATCAACAACCACATAGCATTGTTGGTGTGTTAACACCAACTTCGAGACTTGTGTATTCTGCAAACATGCATCAGAATGATGAAATGAATCCAAGAAATAGTTCAGACGTTGGCATTAATAATACAGTATTGTGTCCTCAGTTTGAACAAACTACTCTTGTCAATTCGTCATCTTGGGAGCATCTTCATCCTTTGGGTACTTACTGGTGTTAG 816 0.4179 MGRVKLQIKKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRPSFFSGNKSIEEILERYVNLQSGDHGSTFRSCLEVRREIFTCKSQLKEMEKRLRIFEGDPSEITTLRDAEYREYVLRQTLKQVQLRKCVLEENNSEASHSPQVHGAKSVDVNSFVTSASKNRVDWFPHGNPHARTLNFENVYDPAPTRDQQPHSIVGVLTPTSRLVYSANMHQNDEMNPRNSSDVGINNTVLCPQFEQTTLVNSSSWEHLHPLGTYWC* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g01513 271 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phac9g01513 271 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phac9g01513 271 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phac9g01513 271 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phac9g01513 271 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 55 IPR002100 GO:0003677|GO:0046983
Phac9g01513 271 Gene3D - 13 91 IPR036879 GO:0003677|GO:0046983
Phac9g01513 271 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phac9g01513 271 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Phac9g01513 271 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Phac9g01513 271 FunFam Agamous-like MADS-box protein AGL66 isoform A 14 79 - -
Phac9g01513 271 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g01513 Phac-Chr9 12329721 12332528 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g01513 1 147 Type I MADS-box Gene Family AT1G22130 42.553 2.03e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phac9g01513 SRF-TF 6.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g01513 - - pvu:PHAVU_009G069300g 530.791