Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g01512 ATGGGGAGAGTGAAGCTTCAGATCAAGAAGATTGAGAACACCACAAACAGGCAAGTCACTTTCTCCAAGAGGAGGAATGGACTCATCAAGAAAGCTTACGAACTTTCTGTTCTTTGTGATGTTGATGTGGCTCTCATCATGTTTTCCCCATCTGGAAGACCCAGTTTCTTCTCTGGCAACAAAAGCATTGAAGAAATTCTAGAACGATATGTTAACCTTCAGAGTGGTGATCACGGAAGGATGCATAACCAAGAGCACGTTCAGAAGTTGCTTGGTAAGTTGAAAGATGAAGCTGATAAAACATGTCAAGTCCCTAGCCCAATGACTTCATCAGTTTCTCAAATTGAGGAGGTTCGAAGAGAAATTTTTACTTGCAAGTCTCAATTGAAAGAGATGGAAAAGCGCCTAAGGATATTTGAAGGTGATCCTTCCGAGATCACAACGCTGAGAGACGCTGAATATCGTGAATATGTCCTTCGTCAAACTCTCAAACAAGTGCAATTGCGAAAGTGTGTTTTGGAGGAGAATAATTCCGAAGCCTCTCATTCCCCACAGGTACATGGTGCAAAAAGTGTAGATGTAAATAGTTTTGTCACCAGCGCCTCAAAGAACCGAGTAGACTGGTTTCCACATGGAAATCCACATGCTCGAACTCTGAACTTTGAGAATGTTTATGACCCTGCTCCTACCAGAGATCAACAACCACATAGCATTGTTGGTGTGTTAACACCAACTTCGAGACTTGTGTATTCTGCAAACATGCATCAGAATGATGAAATGAATCCAAGAAATAGTTCAGACGTTGGCATTAATAATACAGTATTGTGTCCTCAGTTTGAACAAACTACTCTTGTCAATTCGTCATCTTGGGAGCATCTTCATCCTTTGGGTACTTACTGGTGTTAG 906 0.415 MGRVKLQIKKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRPSFFSGNKSIEEILERYVNLQSGDHGRMHNQEHVQKLLGKLKDEADKTCQVPSPMTSSVSQIEEVRREIFTCKSQLKEMEKRLRIFEGDPSEITTLRDAEYREYVLRQTLKQVQLRKCVLEENNSEASHSPQVHGAKSVDVNSFVTSASKNRVDWFPHGNPHARTLNFENVYDPAPTRDQQPHSIVGVLTPTSRLVYSANMHQNDEMNPRNSSDVGINNTVLCPQFEQTTLVNSSSWEHLHPLGTYWC* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g01512 301 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phac9g01512 301 Coils Coil 115 135 - -
Phac9g01512 301 FunFam Agamous-like MADS-box protein AGL66 isoform A 14 79 - -
Phac9g01512 301 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phac9g01512 301 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 55 IPR002100 GO:0003677|GO:0046983
Phac9g01512 301 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phac9g01512 301 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phac9g01512 301 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phac9g01512 301 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 193 - -
Phac9g01512 301 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Phac9g01512 301 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Phac9g01512 301 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g01512 Phac-Chr9 12329721 12332528 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g01512 1 170 Type I MADS-box Gene Family AT1G77980 48.352 1.49e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phac9g01512 SRF-TF 7.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g01512 - - pvu:PHAVU_009G069300g 500.36