Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g01487 ATGGCTCTCGAAGCTCTTCAATCACCCACCACCGCCAACCCATCGTTTAGTCCCTTTGAAGAAGCCAATCTCAGTTACTTAGACACACCTTGGGCCAAGCGAAAGCGTTCTAAGCGTGCCCGCATGGACCAACAACTGCAACTACAACACCCTTCCTGCACCGAGGAGGAGTACCTGGCTCTCTGTCTCATCATGCTCGCTCGCGGCGGCTCTCACGCTGCCACCGCCATCCCCACCACCTCCAAACCTGCTCTCTCAGACAACAACTCGGCGCCGCTCTCCGCCGCGAAACTCACCTACAAATGCTCCGTCTGCAACAAGGCCTTCTCCTCTTACCAAGCCCTCGGCGGACACAAGGCCAGCCACCGGAAATTAGCTGGCGCCGCCGAAGATCAGCCTGCCTCCTCCAGCGTGACCACGACTTCTGCGTCCAACGGCGGAGGTAGGACCCATGAGTGCTCCATATGCCACAAGACGTTCCCGACAGGACAGGCCTTGGGAGGACACAAACGTTGTCACTACGAAGGCGGCGGCGGCGGCGGTAACAGCGCCGTAACCGCCTCCGAAGGTGTGGGGTCCACTCACACAGGAAGCCACCGCGATTTCGATCTCAACCTCCCGGCTTTTCCGGACTTTCCAACGAGGTTCTTCGCGGATGAAGAGGTTTCCAGCCCCCATCCATCCAAGAAGCCCCGTCTCCATTTGACTATACCCAAGATTGAAATCCCTCAGCACTAA 738 0.5827 MALEALQSPTTANPSFSPFEEANLSYLDTPWAKRKRSKRARMDQQLQLQHPSCTEEEYLALCLIMLARGGSHAATAIPTTSKPALSDNNSAPLSAAKLTYKCSVCNKAFSSYQALGGHKASHRKLAGAAEDQPASSSVTTTSASNGGGRTHECSICHKTFPTGQALGGHKRCHYEGGGGGGNSAVTASEGVGSTHTGSHRDFDLNLPAFPDFPTRFFADEEVSSPHPSKKPRLHLTIPKIEIPQH* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g01487 245 ProSitePatterns Zinc finger C2H2 type domain signature. 102 122 IPR013087 -
Phac9g01487 245 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 35 208 IPR044653 GO:0003700
Phac9g01487 245 MobiDBLite consensus disorder prediction 186 200 - -
Phac9g01487 245 ProSitePatterns Zinc finger C2H2 type domain signature. 153 173 IPR013087 -
Phac9g01487 245 ProSiteProfiles Zinc finger C2H2 type domain profile. 100 122 IPR013087 -
Phac9g01487 245 MobiDBLite consensus disorder prediction 220 245 - -
Phac9g01487 245 SMART c2h2final6 100 122 IPR013087 -
Phac9g01487 245 SMART c2h2final6 151 173 IPR013087 -
Phac9g01487 245 MobiDBLite consensus disorder prediction 178 202 - -
Phac9g01487 245 SUPERFAMILY beta-beta-alpha zinc fingers 99 173 IPR036236 -
Phac9g01487 245 MobiDBLite consensus disorder prediction 124 150 - -
Phac9g01487 245 Gene3D Classic Zinc Finger 98 173 - -
Phac9g01487 245 ProSiteProfiles Zinc finger C2H2 type domain profile. 151 173 IPR013087 -
Phac9g01487 245 MobiDBLite consensus disorder prediction 132 149 - -
Phac9g01487 245 Pfam C2H2-type zinc finger 151 174 - -
Phac9g01487 245 Pfam C2H2-type zinc finger 100 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g01487 Phac-Chr9 12190675 12193010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g01487 1 237 C2H2 Transcription Factor Family AT1G27730 49.187 4.67e-66 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac9g01487 zf-C2H2_6 2.3e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g01487 - - vra:106759864 392.889