Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g01439 ATGCCTCCGTACCAAGAAGACCTAGTGGCAACAGAGACAACAACCACGAAGGATGCTAATGGTGCTAGCGTTTTGGATCTGAAAACGTTGATTGAGGAGCTTGAATCATCCATTGAGGTCCCTTCCGTTTTTATCTGCCCAATCTCGCTGGAGCCAATGCAAGACCCCGTCACCCTTTGCACGGGACAAACCTACGACCGTTCCAACATCCTCAAATGGTTCTCCCTCGGCCACAACACCTGCCCCACAACAATGCAAGACCTTTGGGACGATTCCGTCACGCCCAACACCACTCTCCACCACTTCATCCTCTCCTGGTTCTCGCAGAAGTTCTTGGCCATGAAGAAGAAGCTCGAGGACGTTCAAGGCACTGCCTTGGAGCTCCTGGACACGCTCAAAAGGGTCAAGGGTCAAAACAGAGTTCGCGCCCTCAAACAGCTTCGCAAACTCGTCGATTCCCACCTCTCCACTAGGAAAACCGTCGAGGAAAACAACGGGCTTGCCTTGATTTCTTCCCTGTTGGGTCCTTTCACCTCGCACGCGGTTGGGTCGGAAGCAATTGGGATTCTTGTGAATTTGGATTTGGGTTCGGAGCTGAAGAGGAATCTCATGCAACCCGCCAAGGTTTCTTTGTTGGTGGACATCATGAACGAGGGAACCATCCAGACCAAGATGAATTGCGCCAAGTTGATTCAAATGTTGTTGGTGGAAGGTAACCCCTCCGAGACCGTTGTTTTATCAAGTTTGAGTCTTTTGGTTGGGGTTTTAAGGTTAGTGAGAGATAAAAAACACCCAACAAGCGTTTTAACCGGACTCATATTACTCAAAATCGTGTGTTCGCGTGAATCGGTTAGAAGTACAATTGTAAGCATAGGTGCAGTGCCTCAGCTGATTCAGCTTTTGCCCACTTTGAACAACGAGTGTTTAGAGATAGCCCTTAATATTCTTGAAGTCTTGTCAACACTTCCTGAGGGAAGAATAGCTTTGAAAGAGTGTCCCAATATTATTCCCAGTGTGGTCAAGTTGGTGATGAGAGTCTCAGAAAGTTGCACACAATTCGCATTGTCGATTTTGTGGGCTATTTACAAGCTTGCCCCTGAAGAATGTGCTTCAAAAGCGGTTGAAGCAGGGTTGGCGGCGAAACTACTTCTAGTGATTCAGAGCGGTTGCAACCCGGTACTAAAGCAGAAATCTGCGGAGTTTTTGAAAATGTGCAGTTTAGATTACTCTTCTAGCATCTTGATTTCTAAGTGTATGCTTACTGCCACAATACAATGA 1278 0.4726 MPPYQEDLVATETTTTKDANGASVLDLKTLIEELESSIEVPSVFICPISLEPMQDPVTLCTGQTYDRSNILKWFSLGHNTCPTTMQDLWDDSVTPNTTLHHFILSWFSQKFLAMKKKLEDVQGTALELLDTLKRVKGQNRVRALKQLRKLVDSHLSTRKTVEENNGLALISSLLGPFTSHAVGSEAIGILVNLDLGSELKRNLMQPAKVSLLVDIMNEGTIQTKMNCAKLIQMLLVEGNPSETVVLSSLSLLVGVLRLVRDKKHPTSVLTGLILLKIVCSRESVRSTIVSIGAVPQLIQLLPTLNNECLEIALNILEVLSTLPEGRIALKECPNIIPSVVKLVMRVSESCTQFALSILWAIYKLAPEECASKAVEAGLAAKLLLVIQSGCNPVLKQKSAEFLKMCSLDYSSSILISKCMLTATIQ* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g01439 425 Gene3D - 125 266 IPR011989 -
Phac9g01439 425 SUPERFAMILY ARM repeat 235 406 IPR016024 -
Phac9g01439 425 PANTHER WDSAM1 PROTEIN 37 411 IPR045185 GO:0061630
Phac9g01439 425 Pfam U-box domain 40 110 IPR003613 GO:0004842|GO:0016567
Phac9g01439 425 CDD RING-Ubox_PUB 41 93 IPR045210 -
Phac9g01439 425 SUPERFAMILY ARM repeat 127 243 IPR016024 -
Phac9g01439 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 122 IPR013083 -
Phac9g01439 425 SMART Ubox_2 43 106 IPR003613 GO:0004842|GO:0016567
Phac9g01439 425 Gene3D - 269 422 IPR011989 -
Phac9g01439 425 ProSiteProfiles U-box domain profile. 39 113 IPR003613 GO:0004842|GO:0016567
Phac9g01439 425 SUPERFAMILY RING/U-box 37 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g01439 Phac-Chr9 11886655 11889084 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g01439 25 425 U-box Gene Family AT3G49810 63.342 0.0 515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g01439 - - gmx:100808281 725.702