Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g01427 ATGGAAGTAGAACATTTCATCCAAACCTCAAGTCAACATACTGCTTTCCCAAACATGAAAATCCCCAATCCTATACTCACTTTCTTCATCCTCTTCAACCCTCTCCTAGTTGTGGCAATCGTAGAAACATGTTCAGACAGCATTTGTGAAGGTGGTGAACCACTAATCCGATTCCCCTTCCGCATAAAAGGAAAACACGCAGACCCATGCGGATATCCAGGCTTCATAGTCTCCTGCACCCAGAACGCCCAAACACTCCTCAACCTACCAAATTGGGGCCCACTCAAAATCCAAACTATAAACTACGCCGCGCAGCAACTCTGGGTGAACGATCCCAACAACTGCCTCCCCAAACACCTCCTCTCTCTCAATCTCTCCACCTCTCCCTTCCGCGCCGTTTACCACCAGCAGTTCACCTTCTTCAACTGCTCCGCCAATTTGGAGAACCTCGTTCATCGATACCGTCCCATAGGTTGTCTCAGCGATTCTCCCAAGTACGTCGTTTTCGCGACACCTTCTACTACTGTGGTTGGCCACTTGTCTTCTCTGTGTCATTTAGTGGCGAGGGTGAAGGTGCCTGTGCAGTCACCGTTTTACGATCAAGTCAAGTCGTCGGAACTCGGCGAGGATCTGCGTCTGTCGTGGGACTCGCCGGCGTGCGGGAGGTGCGAGTCCCGCGGTGGCCGGTGCGGCTTCAAGAGTGAGGACACTTTTGAGCTTGACTGCTCTGGTATCCCTTCGAAAGGGATTTCCCGTGGTGCCCGTTACGCCTTAGCCATATGCATAGGGGTACCAGCTATGTTATGCTCCTTTGGAGTATTGAGTTGCATCTGCAGGTGGCTGAAAGTGGGGAACCACGATGGACCTTGGGCTCACGAAAGTGTGGCAGATTTTGAGGCTCTTGTGGGCTCACGGCCCACAACAGTGTTGGGCCTGGACAGACCAACAATCGAATCGTACCCAAAAATAGTTATAGGTGAGAACAGACGGTTACCTAAGAAGGGTGAGAAAAGATGCTCAATATGTCTCTCAGAGTACATGCCAAAGGAGACAGTGAAAAGCATACCTGAATGTGGACACTGCTTTCATGCACAATGCATCGATGAATGGCTTCCACTGAACGCCTCCTGCCCAATTTGCAGAACTTCTCCCCGAAAGTTTCCACAACCGCGTGCTCGATCATCACCATAG 1191 0.5088 MEVEHFIQTSSQHTAFPNMKIPNPILTFFILFNPLLVVAIVETCSDSICEGGEPLIRFPFRIKGKHADPCGYPGFIVSCTQNAQTLLNLPNWGPLKIQTINYAAQQLWVNDPNNCLPKHLLSLNLSTSPFRAVYHQQFTFFNCSANLENLVHRYRPIGCLSDSPKYVVFATPSTTVVGHLSSLCHLVARVKVPVQSPFYDQVKSSELGEDLRLSWDSPACGRCESRGGRCGFKSEDTFELDCSGIPSKGISRGARYALAICIGVPAMLCSFGVLSCICRWLKVGNHDGPWAHESVADFEALVGSRPTTVLGLDRPTIESYPKIVIGENRRLPKKGEKRCSICLSEYMPKETVKSIPECGHCFHAQCIDEWLPLNASCPICRTSPRKFPQPRARSSP* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g01427 396 Pfam Ring finger domain 338 381 IPR001841 -
Phac9g01427 396 SMART ring_2 339 380 IPR001841 -
Phac9g01427 396 CDD RING-H2_EL5-like 338 381 - -
Phac9g01427 396 Pfam Wall-associated receptor kinase galacturonan-binding 44 111 IPR025287 GO:0030247
Phac9g01427 396 Pfam Wall-associated receptor kinase C-terminal 184 242 IPR032872 -
Phac9g01427 396 ProSiteProfiles Zinc finger RING-type profile. 339 381 IPR001841 -
Phac9g01427 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 385 IPR013083 -
Phac9g01427 396 SUPERFAMILY RING/U-box 334 384 - -
Phac9g01427 396 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 27 384 IPR046948 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g01427 Phac-Chr9 11629685 11632139 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g01427 42 384 C3H Transcription Factor Family AT2G46495 36.080 1.17e-63 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g01427 - - vun:114163980 689.108