Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g01422 ATGATACGAGAGTATCATAGGAAGCACCCGGTTGCACGTGTCGTTGACGCCAATGATGATTATGAAACGGTTCTCAAAGAAGAACCTCAAATTGAGTTTAGTGGAGAGGAAGCTCTTGGTCGATACTTAGATCTGCATGAATTATATTATCAGTATGTCAATTCTAAGTTTGGAGAGCCACTTGAGTATTCTGCATATGTTGATGTTTTCTCAGACACAAATAAGATTCCCCGCAAAATGAAAATGACCAGACAGTACCGAGAATATATGGTGAATCTTTTGGAGTATCTGATATACTTTTTCCAGCGTACCGAGCCCCTGCAAGATCTTGACCGAATTTTCTCAAAGGTAACAACTGAATTTGAAGAAAATTGGGCTGCTGGAAAGGTTCGGGGATGGGAAAATGACAATCAGGAGAATGGACATGTACCTGCTGAGCATTCTACCATTGATCTTGATTATTATAGTACTGTTGAAGAGCTGATGGAAGTGGGTCCTGAAAGGTTAAAGGAGGCTCTGGCTGCATTGGGGCTTAAGACTGGTGGTACTATCCAGCAACGGGCTGAGAGGCTCTTCCTCACAAAGCACACACCTCTTGAAAAGTTGGAGAGAAAGCATTTTGCTAAGGGGACACGTGGTGTAGAAAAGAACAGGGTTGCTGCAGTTCTACAAGAAGATGGGAATTCTAAAGAAATTGCATTGATGGAAGCTAAAATGGAAAAGCTGTGTGATTTGTTAGAGGAGACAATTGCTCGAACAAAAGACAATGTTGTAAAGAAACAGGCCCTAACATATGAAGAAATGGAAGCAGAACGTGAGGAGGAAGAGACACAAGAGGACACTGAAAGCGAAGATGACGAGCAGCAGATATATAATCCCCTAAAATTACCAATGGGGTGGGATGGAAAACCTATACCTTATTGGCTATATAAGCTACATGGTCTGGGTCAGGAATTTAAGTGTGAGATATGTGGGAACTATAGTTATTGGGGCCGTCGGGCTTTTGAACGACATTTTAAAGAATGGCGCCATCAACATGGGATGCGGTGTCTTGGTATACCAAATACCAAAAATTTCAATGAAATCACATCAATTGAGGAAGCAAAGGACCTTTGGAAGAAGATACAGCAAAGACAAGGAGTGAACAAGTGGCGCCCAGATCTAGAGGAAGAGTATGAAGACAAAGAAGGCAACATCTATAATAAGAAGACATACACTGACTTACAGCGGCAGGGACTGATCTGA 1245 0.4201 MIREYHRKHPVARVVDANDDYETVLKEEPQIEFSGEEALGRYLDLHELYYQYVNSKFGEPLEYSAYVDVFSDTNKIPRKMKMTRQYREYMVNLLEYLIYFFQRTEPLQDLDRIFSKVTTEFEENWAAGKVRGWENDNQENGHVPAEHSTIDLDYYSTVEELMEVGPERLKEALAALGLKTGGTIQQRAERLFLTKHTPLEKLERKHFAKGTRGVEKNRVAAVLQEDGNSKEIALMEAKMEKLCDLLEETIARTKDNVVKKQALTYEEMEAEREEEETQEDTESEDDEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKKIQQRQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g01422 414 MobiDBLite consensus disorder prediction 268 287 - -
Phac9g01422 414 Coils Coil 236 256 - -
Phac9g01422 414 PANTHER SPLICING FACTOR SF3A-RELATED 2 140 - -
Phac9g01422 414 Pfam SF3a60/Prp9 C-terminal 295 414 IPR024598 GO:0000398|GO:0003723|GO:0005681
Phac9g01422 414 ProSiteProfiles Zinc finger matrin-type profile. 319 350 IPR000690 GO:0003676|GO:0005634|GO:0008270
Phac9g01422 414 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 32 81 IPR031774 -
Phac9g01422 414 Coils Coil 258 285 - -
Phac9g01422 414 MobiDBLite consensus disorder prediction 267 287 - -
Phac9g01422 414 Pfam Replication stress response SDE2 C-terminal 128 209 IPR025086 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g01422 Phac-Chr9 11586850 11595277 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g01422 2 414 C2H2 Transcription Factor Family AT5G06160 74.334 0.0 610
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g01422 K12827 - gmx:100815393 781.171