Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g01397 ATGGACTTGGAAAGCGTTGAGTGTGTGTCATCCTCGGATGGCATGGAAGAGGATGAGATCCACACCAATCATCATCACTCTGAGTTTTCTTCCACAAAGCCTCGCAATGGAGGCACCAATAACGTTAATTCTGTGGGCTCCACCGCCCTTGCTCCGGCAACCAGCGTCCACGAGTTGCTGGAATGTCCTGTGTGTACTAATTCAATGTACCCTCCAATTCACCAGTGCCACAATGGCCACACACTCTGTTCCACGTGTAAAACAAGGGTGCATAACCGATGTCCCACTTGTAGACAAGAGCTTGGAGATATTAGGTGTCTGGCACTGGAAAAGGTGGCTGAATCACTTGAGCTACCTTGCAAGTACTACTCCCTTGGATGTTCAGAAATCTTTCCATATTACAGCAAACTTAAGCATGAGACAGTGTGCAATTATAGACCATATAGTTGCCCTTATGCTGGATCAGAGTGTTCTGTTGTGGGGGATATTCCCTTCCTTGTTGCTCATTTAAGGGACGATCATAAAGTGGACATGCACACAGGATGCACATTCAACCATCGTTATGTGAAGTCAAATCCGCGTGAAGTGGAGAATGCAACCTGGATGCTCACAGTGTTTCATTGTTTTGGCCAATATTTCTGCCTTCATTTTGAAGCTTTCCAGCTTGGCATGGCACCTGTTTACATGGCATTCCTTCGTTTTATGGGTGATGAGAATGAGGCTAGGAATTATAGCTATAGCCTAGAGGTTGGGGCGAATGGTAGGAAACTGATTTGGGAGGGTACGCCACGGAGTGTTCGAGATAGCCACCGTAAAGTCAGGGATAGCCATGATGGGCTCATTATTCAAAGAAATATGGCTCTATTTTTCTCTGGTGGGGACAGAAAGGAGCTGAAACTCAGAGTTACAGGAAGAATATGGAAGGAGCAACAGAATTCGGATGCTGGTGTGTGCATGCCAAATCTCTGTAGTTGA 975 0.4615 MDLESVECVSSSDGMEEDEIHTNHHHSEFSSTKPRNGGTNNVNSVGSTALAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCSEIFPYYSKLKHETVCNYRPYSCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNSDAGVCMPNLCS* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g01397 324 MobiDBLite consensus disorder prediction 14 31 - -
Phac9g01397 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 168 IPR013083 -
Phac9g01397 324 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 37 309 - -
Phac9g01397 324 Pfam Seven in absentia protein family 104 303 IPR018121 GO:0005737|GO:0006511|GO:0007275
Phac9g01397 324 CDD RING-HC_SIAHs 60 98 - -
Phac9g01397 324 SUPERFAMILY TRAF domain-like 115 307 - -
Phac9g01397 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 104 IPR013083 -
Phac9g01397 324 FunFam E3 ubiquitin-protein ligase SINAT3 114 170 - -
Phac9g01397 324 CDD Sina 176 304 - -
Phac9g01397 324 FunFam E3 ubiquitin-protein ligase SINAT5-like 171 303 - -
Phac9g01397 324 SUPERFAMILY RING/U-box 53 101 - -
Phac9g01397 324 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 169 303 IPR008974 GO:0005515
Phac9g01397 324 MobiDBLite consensus disorder prediction 1 45 - -
Phac9g01397 324 FunFam E3 ubiquitin-protein ligase SINAT3 11 113 - -
Phac9g01397 324 ProSiteProfiles Zinc finger RING-type profile. 62 98 IPR001841 -
Phac9g01397 324 ProSiteProfiles Zinc finger SIAH-type profile. 115 175 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g01397 Phac-Chr9 11181407 11185625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g01397 30 310 C3H Transcription Factor Family AT2G41980 75.801 5.74e-165 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g01397 K04506 - gmx:100810573 659.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac9g01397 9 11181407 11185625 Phac9g01397 9 11181407 11185625 ECH