Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g01306 ATGGCGGTTGCTGAGAATGTTGGGGCGAAAATCGGTTCTTCGAGTCAGAGTTTGGACAGCGGTGTAGTGTCTGCGGATTCGAGTGAGGTCGAGAAATCGAAAACCAGAAGCGATCAGAATCTGAAGAACGGTGTGTTCACCCATCAACAGCATCCAGAGAGAGTTCCGAGTTCTATGACAGTTCCTAACGGAAATTACAGCTACAATACTCAGATGCACGCAAATGGGGTGAACAACGATGGGTATGGAATGAATGGGGTCATGAGTGGGGAGAATGGGGGTGAGAGTTTCAAGCGTGATATGAGGGATTTGGAAGAGCTTTTGTCAAAGCTGAACCCCATGGCTGAGGAATTTGTGCCCCCATCACTAACCAATACTCATGGCTTTTTAGCTGGACCTAATGCTGGGTTTGGTTACACTAACAATTTTATGCTGCCTAATAACTTTGGCAGTACTAATGGACAAACTAACAATAGAAGGTATGTGTTACAGAGGAAGAATGGCTATACTCCTGGGAAGCGAAGAGTGAATCATAAAATGGATATGGAGAAAAGAGAAGAGATGATTCGGAGGACCGTTTATGTATCTGACATTGATCAACTGGTTACTGAAGAGCAGCTGGCTGCTCTCTTTCTCAACTGTGGCCAGGTTGTTGATTGCCGTGTATGTGGAGATCCTAATTCTATTCTTCGTTTTGCCTTCATTGAGTTTACTGATGAAGAGGGAGCAAGGGCTGCCTTGAGCTTGTCTGGTACCATGCTTGGATATTACCCGCTGAGAGTGCTGCCTTCAAAAACTGCCATCGCACCCGTGAATCCAACATTTTTGCCTAGGTCTGAAGATGAAAGGGAAATGTGCTCAAGAACAATTTATTGCACAAATATTGACAAGAAGCTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGTGGAGAGGTTCAACGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTGGTAATTGCTTGCTAG 1026 0.4435 MAVAENVGAKIGSSSQSLDSGVVSADSSEVEKSKTRSDQNLKNGVFTHQQHPERVPSSMTVPNGNYSYNTQMHANGVNNDGYGMNGVMSGENGGESFKRDMRDLEELLSKLNPMAEEFVPPSLTNTHGFLAGPNAGFGYTNNFMLPNNFGSTNGQTNNRRYVLQRKNGYTPGKRRVNHKMDMEKREEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEEGARAALSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVEFALVIAC* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g01306 341 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 290 336 IPR000504 GO:0003723
Phac9g01306 341 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 256 IPR000504 GO:0003723
Phac9g01306 341 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 288 335 IPR000504 GO:0003723
Phac9g01306 341 MobiDBLite consensus disorder prediction 9 28 - -
Phac9g01306 341 Pfam Ataxin-2 C-terminal region 108 122 IPR009818 -
Phac9g01306 341 Gene3D - 281 338 IPR012677 -
Phac9g01306 341 MobiDBLite consensus disorder prediction 1 61 - -
Phac9g01306 341 Gene3D - 150 268 IPR012677 -
Phac9g01306 341 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 266 IPR000504 GO:0003723
Phac9g01306 341 SUPERFAMILY RNA-binding domain, RBD 191 336 IPR035979 GO:0003676
Phac9g01306 341 MobiDBLite consensus disorder prediction 39 61 - -
Phac9g01306 341 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 106 336 - -
Phac9g01306 341 SMART rrm1_1 192 262 IPR000504 GO:0003723
Phac9g01306 341 FunFam Polyadenylate-binding protein-interacting protein 11 156 268 - -
Phac9g01306 341 CDD RRM1_CID8_like 189 268 IPR034823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g01306 Phac-Chr9 10263013 10270182 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g01306 190 335 Eukaryotic Initiation Factors Gene Family AT1G34140 24.161 3.34e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g01306 - - vum:124835710 652.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac9g01306 9 10263013 10270182 Phac9g01306 9 10263013 10270182 ECH