LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac9g01305	ATGGCGGTTGCTGAGAATGTTGGGGCGAAAATCGGTTCTTCGAGTCAGAGTTTGGACAGCGGTGTAGTGTCTGCGGATTCGAGTGAGGTCGAGAAATCGAAAACCAGAAGCGATCAGAATCTGAAGAACGGTGTGTTCACCCATCAACAGCATCCAGAGAGAGTTCCGAGTTCTATGACAGTTCCTAACGGAAATTACAGCTACAATACTCAGATGCACGCAAATGGGGTGAACAACGATGGGTATGGAATGAATGGGGTCATGAGTGGGGAGAATGGGGGTGAGAGTTTCAAGCGTGATATGAGGGATTTGGAAGAGCTTTTGTCAAAGCTGAACCCCATGGCTGAGGAATTTGTGCCCCCATCACTAACCAATACTCATGGCTTTTTAGCTGGACCTAATGCTGGGTTTGGTTACACTAACAATTTTATGCTGCCTAATAACTTTGGCAGTACTAATGGACAAACTAACAATAGAAGGAGGAAGAATGGCTATACTCCTGGGAAGCGAAGAGTGAATCATAAAATGGATATGGAGAAAAGAGAAGAGATGATTCGGAGGACCGTTTATGTATCTGACATTGATCAACTGGTTACTGAAGAGCAGCTGGCTGCTCTCTTTCTCAACTGTGGCCAGGTTGTTGATTGCCGTGTATGTGGAGATCCTAATTCTATTCTTCGTTTTGCCTTCATTGAGTTTACTGATGAAGAGGGAGCAAGGGCTGCCTTGAGCTTGTCTGGTACCATGCTTGGATATTACCCGCTGAGAGTGCTGCCTTCAAAAACTGCCATCGCACCCGTGAATCCAACATTTTTGCCTAGGTCTGAAGATGAAAGGGAAATGTGCTCAAGAACAATTTATTGCACAAATATTGACAAGAAGCTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGTGGAGAGGTTCAACGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTGGCTGAGAGTGCAATTGCTGCTCTGAGCTGTAGTGGTGTGATTTTGGGTTCACTGCCTATAAGGGTAAGTCCATCAAAGACACCTGTCCGCCCTCGTGCTCCTCGATCCTCCATTCACTGA	1119	0.4531	MAVAENVGAKIGSSSQSLDSGVVSADSSEVEKSKTRSDQNLKNGVFTHQQHPERVPSSMTVPNGNYSYNTQMHANGVNNDGYGMNGVMSGENGGESFKRDMRDLEELLSKLNPMAEEFVPPSLTNTHGFLAGPNAGFGYTNNFMLPNNFGSTNGQTNNRRRKNGYTPGKRRVNHKMDMEKREEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEEGARAALSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVEFALAESAIAALSCSGVILGSLPIRVSPSKTPVRPRAPRSSIH*	373

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac9g01305	372	MobiDBLite	consensus disorder prediction	9	28	-	-
	Phac9g01305	372	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	284	360	IPR000504	GO:0003723
	Phac9g01305	372	PANTHER	SERINE/ARGININE-RICH SPLICING FACTOR	106	365	-	-
	Phac9g01305	372	MobiDBLite	consensus disorder prediction	1	61	-	-
	Phac9g01305	372	FunFam	Polyadenylate-binding protein-interacting protein 11	152	264	-	-
	Phac9g01305	372	CDD	RRM2_CID8_like	280	361	IPR034825	-
	Phac9g01305	372	MobiDBLite	consensus disorder prediction	39	61	-	-
	Phac9g01305	372	SUPERFAMILY	RNA-binding domain, RBD	157	263	IPR035979	GO:0003676
	Phac9g01305	372	FunFam	Polyadenylate-binding protein-interacting protein 10	278	356	-	-
	Phac9g01305	372	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	187	262	IPR000504	GO:0003723
	Phac9g01305	372	SMART	rrm1_1	188	258	IPR000504	GO:0003723
	Phac9g01305	372	SMART	rrm1_1	285	356	IPR000504	GO:0003723
	Phac9g01305	372	Pfam	Ataxin-2 C-terminal region	108	122	IPR009818	-
	Phac9g01305	372	Gene3D	-	148	264	IPR012677	-
	Phac9g01305	372	Gene3D	-	271	367	IPR012677	-
	Phac9g01305	372	SUPERFAMILY	RNA-binding domain, RBD	275	366	IPR035979	GO:0003676
	Phac9g01305	372	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	286	353	IPR000504	GO:0003723
	Phac9g01305	372	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	189	252	IPR000504	GO:0003723
	Phac9g01305	372	CDD	RRM1_CID8_like	185	264	IPR034823	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac9g01305	Phac-Chr9	10263013	10270182	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac9g01305	186	355	Eukaryotic Initiation Factors Gene Family	AT1G34140	24.713	2.68e-10	59.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac9g01305	-		-	gmx:100787572	685.641