LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac9g01304	ATGGCGGTTGCTGAGAATGTTGGGGCGAAAATCGGTTCTTCGAGTCAGAGTTTGGACAGCGGTGTAGTGTCTGCGGATTCGAGTGAGGTCGAGAAATCGAAAACCAGAAGCGATCAGAATCTGAAGAACGGTGTGTTCACCCATCAACAGCATCCAGAGAGAGTTCCGAGTTCTATGACAGTTCCTAACGGAAATTACAGCTACAATACTCAGATGCACGCAAATGGGGTGAACAACGATGGGTATGGAATGAATGGGGTCATGAGTGGGGAGAATGGGGGTGAGAGTTTCAAGCGTGATATGAGGGATTTGGAAGAGCTTTTGTCAAAGCTGAACCCCATGGCTGAGGAATTTGTGCCCCCATCACTAACCAATACTCATGGCTTTTTAGCTGGACCTAATGCTGGGTTTGGTTACACTAACAATTTTATGCTGCCTAATAACTTTGGCAGTACTAATGGACAAACTAACAATAGAAGGAGGAAGAATGGCTATACTCCTGGGAAGCGAAGAGTGAATCATAAAATGGATATGGAGAAAAGAGAAGAGATGATTCGGAGGACCGTTTATGTATCTGACATTGATCAACTGGTTACTGAAGAGCAGCTGGCTGCTCTCTTTCTCAACTGTGGCCAGTTACAGGTTGTTGATTGCCGTGTATGTGGAGATCCTAATTCTATTCTTCGTTTTGCCTTCATTGAGTTTACTGATGAAGAGGGAGCAAGGGCTGCCTTGAGCTTGTCTGGTACCATGCTTGGATATTACCCGCTGAGAGTGCTGCCTTCAAAAACTGCCATCGCACCCGTGAATCCAACATTTTTGCCTAGGTCTGAAGATGAAAGGGAAATGTGCTCAAGAACAATTTATTGCACAAATATTGACAAGAAGCTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGTGGAGAGGTTCAACGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTGGCTGAGAGTGCAATTGCTGCTCTGAGCTGTAGTGGTGTGATTTTGGGTTCACTGCCTATAAGGGTAAGTCCATCAAAGACACCTGTCCGCCCTCGTGCTCCTCGATCCTCCATTCACTGA	1125	0.4524	MAVAENVGAKIGSSSQSLDSGVVSADSSEVEKSKTRSDQNLKNGVFTHQQHPERVPSSMTVPNGNYSYNTQMHANGVNNDGYGMNGVMSGENGGESFKRDMRDLEELLSKLNPMAEEFVPPSLTNTHGFLAGPNAGFGYTNNFMLPNNFGSTNGQTNNRRRKNGYTPGKRRVNHKMDMEKREEMIRRTVYVSDIDQLVTEEQLAALFLNCGQLQVVDCRVCGDPNSILRFAFIEFTDEEGARAALSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVEFALAESAIAALSCSGVILGSLPIRVSPSKTPVRPRAPRSSIH*	375

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac9g01304	374	MobiDBLite	consensus disorder prediction	9	28	-	-
	Phac9g01304	374	SUPERFAMILY	RNA-binding domain, RBD	157	265	IPR035979	GO:0003676
	Phac9g01304	374	CDD	RRM1_CID8_like	185	266	IPR034823	-
	Phac9g01304	374	FunFam	Polyadenylate-binding protein-interacting protein 11	152	266	-	-
	Phac9g01304	374	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	187	264	IPR000504	GO:0003723
	Phac9g01304	374	MobiDBLite	consensus disorder prediction	1	61	-	-
	Phac9g01304	374	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	189	254	IPR000504	GO:0003723
	Phac9g01304	374	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	288	355	IPR000504	GO:0003723
	Phac9g01304	374	MobiDBLite	consensus disorder prediction	39	61	-	-
	Phac9g01304	374	FunFam	Polyadenylate-binding protein-interacting protein 10	280	358	-	-
	Phac9g01304	374	Pfam	Ataxin-2 C-terminal region	108	122	IPR009818	-
	Phac9g01304	374	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	286	362	IPR000504	GO:0003723
	Phac9g01304	374	Gene3D	-	148	266	IPR012677	-
	Phac9g01304	374	Gene3D	-	273	369	IPR012677	-
	Phac9g01304	374	SMART	rrm1_1	188	260	IPR000504	GO:0003723
	Phac9g01304	374	SMART	rrm1_1	287	358	IPR000504	GO:0003723
	Phac9g01304	374	CDD	RRM2_CID8_like	282	363	IPR034825	-
	Phac9g01304	374	PANTHER	SERINE/ARGININE-RICH SPLICING FACTOR	106	367	-	-
	Phac9g01304	374	SUPERFAMILY	RNA-binding domain, RBD	277	368	IPR035979	GO:0003676

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac9g01304	Phac-Chr9	10263013	10270182	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac9g01304	188	343	Eukaryotic Initiation Factors Gene Family	AT1G22760	30.435	1.99e-06	47.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac9g01304	-		-	gmx:100800126	680.633