LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac9g01303	ATGGCGGTTGCTGAGAATGTTGGGGCGAAAATCGGTTCTTCGAGTCAGAGTTTGGACAGCGGTGTAGTGTCTGCGGATTCGAGTGAGGTCGAGAAATCGAAAACCAGAAGCGATCAGAATCTGAAGAACGGTGTGTTCACCCATCAACAGCATCCAGAGAGAGTTCCGAGTTCTATGACAGTTCCTAACGGAAATTACAGCTACAATACTCAGATGCACGCAAATGGGGTGAACAACGATGGGTATGGAATGAATGGGGTCATGAGTGGGGAGAATGGGGGTGAGAGTTTCAAGCGTGATATGAGGGATTTGGAAGAGCTTTTGTCAAAGCTGAACCCCATGGCTGAGGAATTTGTGCCCCCATCACTAACCAATACTCATGGCTTTTTAGCTGGACCTAATGCTGGGTTTGGTTACACTAACAATTTTATGCTGCCTAATAACTTTGGCAGTACTAATGGACAAACTAACAATAGAAGGTATGTGTTACAGAGGAAGAATGGCTATACTCCTGGGAAGCGAAGAGTGAATCATAAAATGGATATGGAGAAAAGAGAAGAGATGATTCGGAGGACCGTTTATGTATCTGACATTGATCAACTGGTTACTGAAGAGCAGCTGGCTGCTCTCTTTCTCAACTGTGGCCAGGTTGTTGATTGCCGTGTATGTGGAGATCCTAATTCTATTCTTCGTTTTGCCTTCATTGAGTTTACTGATGAAGAGGGAGCAAGGGCTGCCTTGAGCTTGTCTGGTACCATGCTTGGATATTACCCGCTGAGAGTGCTGCCTTCAAAAACTGCCATCGCACCCGTGAATCCAACATTTTTGCCTAGGTCTGAAGATGAAAGGGAAATGTGCTCAAGAACAATTTATTGCACAAATATTGACAAGAAGCTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGTGGAGAGGTTCAACGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTGGCTGAGAGTGCAATTGCTGCTCTGAGCTGTAGTGGTGTGATTTTGGGTTCACTGCCTATAAGGGTAAGTCCATCAAAGACACCTGTCCGCCCTCGTGCTCCTCGATCCTCCATTCACTGA	1131	0.4518	MAVAENVGAKIGSSSQSLDSGVVSADSSEVEKSKTRSDQNLKNGVFTHQQHPERVPSSMTVPNGNYSYNTQMHANGVNNDGYGMNGVMSGENGGESFKRDMRDLEELLSKLNPMAEEFVPPSLTNTHGFLAGPNAGFGYTNNFMLPNNFGSTNGQTNNRRYVLQRKNGYTPGKRRVNHKMDMEKREEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEEGARAALSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVEFALAESAIAALSCSGVILGSLPIRVSPSKTPVRPRAPRSSIH*	377

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac9g01303	376	SMART	rrm1_1	192	262	IPR000504	GO:0003723
	Phac9g01303	376	SMART	rrm1_1	289	360	IPR000504	GO:0003723
	Phac9g01303	376	SUPERFAMILY	RNA-binding domain, RBD	278	370	IPR035979	GO:0003676
	Phac9g01303	376	MobiDBLite	consensus disorder prediction	9	28	-	-
	Phac9g01303	376	FunFam	Polyadenylate-binding protein-interacting protein 10	282	360	-	-
	Phac9g01303	376	MobiDBLite	consensus disorder prediction	1	61	-	-
	Phac9g01303	376	CDD	RRM2_CID8_like	284	365	IPR034825	-
	Phac9g01303	376	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	191	266	IPR000504	GO:0003723
	Phac9g01303	376	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	288	364	IPR000504	GO:0003723
	Phac9g01303	376	MobiDBLite	consensus disorder prediction	39	61	-	-
	Phac9g01303	376	Pfam	Ataxin-2 C-terminal region	108	122	IPR009818	-
	Phac9g01303	376	SUPERFAMILY	RNA-binding domain, RBD	169	267	IPR035979	GO:0003676
	Phac9g01303	376	FunFam	Polyadenylate-binding protein-interacting protein 11	156	268	-	-
	Phac9g01303	376	PANTHER	SERINE/ARGININE-RICH SPLICING FACTOR	106	369	-	-
	Phac9g01303	376	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	290	357	IPR000504	GO:0003723
	Phac9g01303	376	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	193	256	IPR000504	GO:0003723
	Phac9g01303	376	CDD	RRM1_CID8_like	189	268	IPR034823	-
	Phac9g01303	376	Gene3D	-	275	371	IPR012677	-
	Phac9g01303	376	Gene3D	-	150	268	IPR012677	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac9g01303	Phac-Chr9	10263013	10270182	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac9g01303	190	359	Eukaryotic Initiation Factors Gene Family	AT1G34140	24.713	2.72e-10	59.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac9g01303	-		-	gmx:100800126	679.863