Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g01221 ATGGAGACTCTGAAAGCTGCTATTCCAGAAAGCCTGAAGCGAGCGATAGCGGATAGCAATGTCGATGAACTTCGAAGCACTTGTTCTTCTCTTCACCGCTTCTTTCTCCACTTCGATCCATTTCACCAGATTATCACTCAACTGGCGGATCCAAAGTATGGTCTGTGCGGTAAGAGTAAGGAAGATGCCTTGAAATCCAAGCAGCTTGGGAATGAATGCTTCTCCAACGCAGATTATGCCAAGGCCTTGGACTGCTATACCCAGGCATTGCGCAAGGCTCCGTTAGATACTGGTGATATGAAAAGTAATCTTGTTGCAACATTATATATCAATCGGGCTACTGTATTGAATAAAATGAGTCTTTTAGTAGAATGCTTGCGAGATTGCACTCGAGCTCTTCAAATTTGTCCAAGCTACGCAAAGGCATGGTACAGGAGAGGTAAGGCAAATGCTTCATTGGGAAATTACAGAAATGCAATTTGTGACCTAAATGTGGCCAAGATCGTGGAACCTTCATTGGGTGGGAAGAGACAAATAGAAGTTGAACTGAAAATTCTTTTAGACCAATGCAAAAGCACAAGTGCGGAAGTACAGATACAACGTAAGGATAACAGCTGCAATACTGTGGGTAAGATGCCTCAAATGAAGCTACAGTGTGTCTCCATGCCTGATAAAGGAAGAGGCATGGTCTCATCATGTGTCATTTCACCAGGTTCTTTGGTTCATTCCGAAGAACCTTATGCTATGATAATTTTAAAGAAATGTCGGGAAACCCATTGCCATTATTGTTTGAATGATCTACCTGCTGATAGAGTTCCTTGTATATCATGTTCAATACCATTGTATTGCTCCCACCAATGCCAGATACGAGCAGGTGGGCAAATGTTCAGGATTTACCCAGAAAAGAATGACACTTTTAAAAAAATGCCCAGTGATCTTGGAGAATATGCTTCTGAAGTTATCCAAAGCGATGATTCTGAACAAGAAATTGAGGATATTACTGAACATAAACATGAATGTGGAGGTGTACATTGGCCTGTGGTACTGCCATCTGAGATTGTTTTGACTGGCCGAATACTAGCAGGGTTTTTGCTGAATAGCACATCTGAAAATATTGTAAACTTTGTGGAAAGGCTGGAGCTTTCTCATTGTTACAAACACATGTCATCCGAAAGCAAATTGGATTCACATATATATGCCACTGTATTGTTATATTGTCTTCAGCACTCTTGTGGAACTATGTTTTCCATAGACGGAGTCTCCATATCACAGGTTGTCATAATTATTTCTCAAATTAAAGTGAATTGTATGACCATTGTTCGTTTAAAATCAATAGATGCTCATGGAGGTCATTTTGGAGAATTTCCATTTCAATCCAGTGTACATTCAACCAGTAATGTGGAACAGGTCAGAGTGGGTAAAGCTATCTATAAAGCTGGCAGTTTATTTAACCATTCTTGCCAACCGAATGTTCATGCATATTTTCTTTCACGCACTCTTTACCTACGAACCACACATGGTGTAGCAGCCGGTTGTCAGCTAGAACTGTCTTATGGTCCACAGGTTGGGTTGTGGGATTGTAAAGATCGCCTTAACTTTCTCAAAGACGAATATGCATTTCATTGTCAGTGTATTGGTTGTTCAGAAGTTAATGTATCTGACGTAGTCCTCAATGCCTTCCATTGTGTCAATCCAAATTGTTCTGGCGCAGTGTTAGAAAGCAGAGTACTTGACTGTGAACAGCAGAAAATCAATCGCTTCACTATTACTGACCGTGTTGACAAGAATGATGACATTTGTGTATGTCTTAATGTCTTCAAACAAAACGGGGCCTATATTCATGGTCAACCTGGATACTGTTTGAAATGTGGTTCTTACTGTGATTTGGAGTCTTCACTAGCAGCAGTCAGTGAAGCTTTAATATGTATCAAAAGGTTGCAGGATGCAATATTGTCGAAAGAAATTTCAAGTATTACTATTTCTGATGCTTTGATATCTCTTCAATCGCTAAGATTAAATTTGCATGCTTACAACAAGCTTATTGCAGAGGCAGAAGACAGCATTGCTCAGGCTTTCTGTTTAGTGGGAGAATTACAATTATCTGTTGATCATTGCAAAGCTTCTATCCAGATTCTGGAAAAGCTATATGATACTGATGATATTGTTATTGCTTATGAACTGGTGAAGCTTTCTTCCATCCAACTTTCCTTGGATGATTCTACTGCTGCGGAAAGCATAAATCGAATCGATGATATCTTCTCACGTTATTATGGACTTCATGCAGACTTGGTGTTCCCTGATCTCCAATATCTCAGGAGAGAAATTGAGAAATTTTCAGTGAAGGCCATCCAATAA 2355 0.3983 METLKAAIPESLKRAIADSNVDELRSTCSSLHRFFLHFDPFHQIITQLADPKYGLCGKSKEDALKSKQLGNECFSNADYAKALDCYTQALRKAPLDTGDMKSNLVATLYINRATVLNKMSLLVECLRDCTRALQICPSYAKAWYRRGKANASLGNYRNAICDLNVAKIVEPSLGGKRQIEVELKILLDQCKSTSAEVQIQRKDNSCNTVGKMPQMKLQCVSMPDKGRGMVSSCVISPGSLVHSEEPYAMIILKKCRETHCHYCLNDLPADRVPCISCSIPLYCSHQCQIRAGGQMFRIYPEKNDTFKKMPSDLGEYASEVIQSDDSEQEIEDITEHKHECGGVHWPVVLPSEIVLTGRILAGFLLNSTSENIVNFVERLELSHCYKHMSSESKLDSHIYATVLLYCLQHSCGTMFSIDGVSISQVVIIISQIKVNCMTIVRLKSIDAHGGHFGEFPFQSSVHSTSNVEQVRVGKAIYKAGSLFNHSCQPNVHAYFLSRTLYLRTTHGVAAGCQLELSYGPQVGLWDCKDRLNFLKDEYAFHCQCIGCSEVNVSDVVLNAFHCVNPNCSGAVLESRVLDCEQQKINRFTITDRVDKNDDICVCLNVFKQNGAYIHGQPGYCLKCGSYCDLESSLAAVSEALICIKRLQDAILSKEISSITISDALISLQSLRLNLHAYNKLIAEAEDSIAQAFCLVGELQLSVDHCKASIQILEKLYDTDDIVIAYELVKLSSIQLSLDDSTAAESINRIDDIFSRYYGLHADLVFPDLQYLRREIEKFSVKAIQ* 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g01221 784 SMART tpr_5 682 715 IPR019734 GO:0005515
Phac9g01221 784 SMART tpr_5 106 139 IPR019734 GO:0005515
Phac9g01221 784 SMART tpr_5 140 173 IPR019734 GO:0005515
Phac9g01221 784 SMART tpr_5 63 96 IPR019734 GO:0005515
Phac9g01221 784 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 778 - -
Phac9g01221 784 Coils Coil 667 687 - -
Phac9g01221 784 Gene3D Tetratricopeptide repeat domain 42 203 IPR011990 GO:0005515
Phac9g01221 784 SUPERFAMILY TPR-like 59 172 IPR011990 GO:0005515
Phac9g01221 784 Gene3D Tetratricopeptide repeat domain 524 779 IPR011990 GO:0005515
Phac9g01221 784 SUPERFAMILY SET domain 219 544 IPR046341 -
Phac9g01221 784 Gene3D SET domain 424 518 IPR046341 -
Phac9g01221 784 Pfam SET domain 226 519 IPR001214 GO:0005515
Phac9g01221 784 ProSiteProfiles SET domain profile. 215 519 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g01221 Phac-Chr9 9652455 9671729 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Phac9g01221 SET 1.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g01221 K24634 - gmx:100783548 1356.27