Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g01171 ATGAAGTATTGTGAGAAAAAGAGTCTTCTTCCTCATCAAAATCAAGATTCAAATTCTAACACTAGAGTGTTGGTTGATTTCATGAAGATGTCAAAGGATGATGATATTATTCAAGAACAATCATATAAGAAGGTAATTGATTCATCTATTTCTCACTCAAAAGGTGCAGTTAAGAAGAACACCAAGGTAGAAAAAACAAAGACTTTTTCTTGCAATTATTGCAACAAAGAGTTTTCTACCTCACAAGCTTTGGGAGGACACCAAAATGCACACAAACAAGAACGTGTTGTTGCAAAACTTCGTCAAGGTTTTGATGTTAAAGGGTTAGCACAATTTCCTTATTACCCGTATTATTCAAGTTTTTATAACTCTCATTCCCTTCATGGAAGATCCTTCAGTGACGCACTTGGAATTCGAAGTGACTCCATGATTCACAAGCTTCCTAGGACTTCAAGAAATATGAAAAATGATTATCCAATTATAAAGAGTGATGCAACTCTTAGTTTGAAGTCGAAAGATGACAACGATAGAATCAATCTTGAAATACTGCCTCTTTTTACAAATGATGTTGTCACTTCATCAAGCCGAGTTAGAAAGATGACTCTTGGAACAAAAGAAATTGCTGATCATTATGTTCCAAAAGAAACTTCCGATGAACCATCTTGCAATCTTGATTTGTCATTGAAGCTTTAA 693 0.3434 MKYCEKKSLLPHQNQDSNSNTRVLVDFMKMSKDDDIIQEQSYKKVIDSSISHSKGAVKKNTKVEKTKTFSCNYCNKEFSTSQALGGHQNAHKQERVVAKLRQGFDVKGLAQFPYYPYYSSFYNSHSLHGRSFSDALGIRSDSMIHKLPRTSRNMKNDYPIIKSDATLSLKSKDDNDRINLEILPLFTNDVVTSSSRVRKMTLGTKEIADHYVPKETSDEPSCNLDLSLKL* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g01171 230 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 12 230 IPR044246 GO:0009788
Phac9g01171 230 SUPERFAMILY beta-beta-alpha zinc fingers 66 96 IPR036236 -
Phac9g01171 230 Pfam C2H2-type zinc finger 69 93 - -
Phac9g01171 230 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Phac9g01171 230 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 96 IPR013087 -
Phac9g01171 230 Gene3D Classic Zinc Finger 47 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g01171 Phac-Chr9 9259502 9260251 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g01171 67 230 C2H2 Transcription Factor Family AT5G10970 31.868 6.10e-16 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac9g01171 zf-C2H2_6 3.8e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g01171 - - pvu:PHAVU_009G043700g 402.519