Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g01170 ATGTCAAAGGATGATGATGTTACTCAAGAACCATCAAATTATAAGGTAATTGATTCATCTATTTCTAACTCAAAAGGTGTAGACAAGAAGAATGTCAATGCAAAAGAAGGAAAGAGTTTCTCTTGCAATTATTGTAAGAAAGAGTTCTCTACCTCACAAGCTTTGGAAGGACATCAAAACGCACACAAACAAGAACGTGTTTTGGCAAAACGTGATCAAGAGAGTCCTTTAACAGAGCACTAA 243 0.3539 MSKDDDVTQEPSNYKVIDSSISNSKGVDKKNVNAKEGKSFSCNYCKKEFSTSQALEGHQNAHKQERVLAKRDQESPLTEH* 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g01170 80 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 14 74 IPR044246 GO:0009788
Phac9g01170 80 MobiDBLite consensus disorder prediction 59 80 - -
Phac9g01170 80 Gene3D Classic Zinc Finger 12 80 - -
Phac9g01170 80 Pfam C2H2-type zinc finger 40 64 - -
Phac9g01170 80 SUPERFAMILY beta-beta-alpha zinc fingers 37 67 IPR036236 -
Phac9g01170 80 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Phac9g01170 80 MobiDBLite consensus disorder prediction 1 28 - -
Phac9g01170 80 MobiDBLite consensus disorder prediction 12 28 - -
Phac9g01170 80 MobiDBLite consensus disorder prediction 53 80 - -
Phac9g01170 80 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g01170 Phac-Chr9 9254051 9254366 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g01170 33 74 C2H2 Transcription Factor Family AT5G01860 69.048 3.11e-15 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac9g01170 zf-C2H2_6 1.3e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g01170 - - var:108320958 110.538