Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g01164 ATGGCTCTTCATCACCGCTTGTTGCTTGACACAAATTCAAGCACGCCTGCACCAAGTAACGTGAATAGGACAAGAGAGACTTTCACAGGTGATGCAAATTTTGACACCAACATGGTGATTATCTTGGCTGCGTTGCTTTGTGCGCTAATATGTGCTTTGGGACTCAACTCAATTGTGCGATGTGCTCTAAGATGTAGCCGCAGGTTTGCTTTTGAGACCCCAGAGGAGACTGCCGCACGTTTGGTAGCAAAAGGCCTAAAGAAGAGTGCATTGCATCAGATCCCTATTGTTGTTTATGGTTCAGGTACTGTCGGTATTGCAGCCACAGATTGTCCGATTTGCCTTGGGGAGTTTGTGGATGGGGAGAAAGTAAGATTGTTGCCAAAATGTAACCATGGATTCCATGTAAGGTGCATAGATACATGGCTCCTCTCACACTCCTCTTGTCCTAATTGCAGACAATCTTTGCTTGAGCAACCGACCATTTCTGGAGCTGTTGCTGCTGGAACCAGTAACTATGCAGGGAATGCTTTAGGAGGACATGAACATGTGTCTTTAGCAGTGGCTGTGGAAGAGGCTGAAAGACTTGGGCATTTATCCCAATTCCCGTGTGTACATCTTCTTTAG 627 0.4609 MALHHRLLLDTNSSTPAPSNVNRTRETFTGDANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETPEETAARLVAKGLKKSALHQIPIVVYGSGTVGIAATDCPICLGEFVDGEKVRLLPKCNHGFHVRCIDTWLLSHSSCPNCRQSLLEQPTISGAVAAGTSNYAGNALGGHEHVSLAVAVEEAERLGHLSQFPCVHLL* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g01164 208 CDD RING-H2_EL5-like 110 153 - -
Phac9g01164 208 MobiDBLite consensus disorder prediction 1 26 - -
Phac9g01164 208 SMART ring_2 111 152 IPR001841 -
Phac9g01164 208 SMART FANCL_C_2 107 160 - -
Phac9g01164 208 MobiDBLite consensus disorder prediction 8 26 - -
Phac9g01164 208 SUPERFAMILY RING/U-box 110 159 - -
Phac9g01164 208 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Phac9g01164 208 Pfam Ring finger domain 110 153 IPR001841 -
Phac9g01164 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 161 IPR013083 -
Phac9g01164 208 PANTHER RING-H2 FINGER PROTEIN ATL78 11 160 IPR044602 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g01164 Phac-Chr9 9193834 9196193 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g01164 6 161 C3H Transcription Factor Family AT3G10910 61.818 2.38e-63 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g01164 - K19040 gmx:100787273 338.191