LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac9g01097	ATGGGATGCGTTTGTGGCAGGTTTTCTCCCCCTCCCCAAGCTGAGGGGCGGAAACAGCCAGTGAAGAGAGTTTTGAGCCGCAAGGGTTCCAGGCCACGCTCCTCTAATGTGGGAGAGAGGGTGAAAAGGGAGACTCAGAGAGTGCGTGTGAGTGTGAATAAGGATTCAGGTGGAGGTGTTGTAGGAGAAGGAGGAGGAGAAAATGTTGCTAAAAAAGAGAAGAATAAGTTATGTGAGGATGCTGATGCTGCTAAAGAAAGTAAGAGTAGTAAAGATTTGGATTTTAAGGAGTCCAAATATGAATCTGTGGAAGGGTGGCCAAAGTGGTTACTGGATAACATCCCCATCAATGTTCTGGCTAAACTTGTTCCCAAGAGCGCTGATTCCTATGAAAAACTTGCCAAGATAGGACGTGGAACATATAGCAATGTGTACAAAGCAAGGGAGAAGGGGACGGGAAAGATTGTTGCTTTGAAGAAGGTACGGTTTGACACATCGGATTCTGAAAGCATAAAGTTTATGGCAAGAGAGATCATGATGCTGCAGAAGCTTGATCATCCCAATGTCATGAAGCTTAAAGGACTAGCCACATCGAGAATGCAGTATAGTCTTTATCTTGTTTTTGACTTCATGCAGTCTGATCTCACACGCATTATCTCTCGACCCGGGGAGACACTCACCGAACCGCAGATCAAGTGCTATATGCAGCAGCTACTTTGTGGTCTCCAACACTGTCACGAGAGGGGAATTATGCACCGGGATATTAAGGCTTCTAACTTGTTAATAGACAGAAGAGGGGTGCTGAAAATTGCAGATTTTGGACTTGCAACTTCCATTGAATCTGAAAAACCTCTAACAAATAGGGTGGTAACACTTTGGTATAGAGCTCCAGAACTTCTTTTGGGTTCAACCGATTATGGATATAGCATTGATCTCTGGAGTGCAGGGTGCCTCTTGGCTGAGATGTTTGTTGGAAGACCAATTATGCCTGGCAGGACAGAGGTTGAACAGATTCAGATGATCTTCAAACTTTGTGGTTCTCCTTCAGAGGATTACTTTAAAAAACTGAAGCTAACAACAAGCTATCGACCTTCACAACATTACAAATCTTCTTTCCAAGAGAACTTCCACAAGTTTCCTTCCTCTACCCAGGCACTCTTGGCTACACTTCTTGATCTCAACCCTACAAATCGTGGAAGTGCTGCCTCTGCCCTTCAAACTGAATTCTTCCTATGTAGTCCATTAGCATGTGACCCTTCAGCTTTACCAGTAATCCACAAAGACGACGATGAACGCTTACAAACTAAGAGAAGCAAAAGGCACAGGGTTTCTAAAAGAGGGCAACCATCTCAAACAAGTAAAAGTGAAGCAGCTGAATCAGGAAAAAACCAAATTGCTGAACAACCCCGTGAAGATAGAGAATCATCGAAAGAGAAGAATGTGGAACAACAGAAGCAGGGTCAAGAAACTGGGTATAGTGCTAGCAGCACATCATCTGGTTCAAGACAATTCACGAATGAAGGGAGCACAAATGCATCTTTATCCCCAGCTTTTCTCTCAAGTGGCAGTGTGAGAAAATCTCCCAAAGCAGAGGGTAACCCAAATGCTCTTAAGAACATAAAGCACTACAATGCACTTTTACAGGCCTCTATGATTGACATGATCAACCCCAGTGAAGGCAGCGAAGTTCCTCAGCTTCCAAAATCCTTCTCTCAGTTGGATTTTCGACTTGGTCCAGACAAGCTATCAAACCTCTATAGCTTATCAAATAAACATATTTAA	1782	0.436	MGCVCGRFSPPPQAEGRKQPVKRVLSRKGSRPRSSNVGERVKRETQRVRVSVNKDSGGGVVGEGGGENVAKKEKNKLCEDADAAKESKSSKDLDFKESKYESVEGWPKWLLDNIPINVLAKLVPKSADSYEKLAKIGRGTYSNVYKAREKGTGKIVALKKVRFDTSDSESIKFMAREIMMLQKLDHPNVMKLKGLATSRMQYSLYLVFDFMQSDLTRIISRPGETLTEPQIKCYMQQLLCGLQHCHERGIMHRDIKASNLLIDRRGVLKIADFGLATSIESEKPLTNRVVTLWYRAPELLLGSTDYGYSIDLWSAGCLLAEMFVGRPIMPGRTEVEQIQMIFKLCGSPSEDYFKKLKLTTSYRPSQHYKSSFQENFHKFPSSTQALLATLLDLNPTNRGSAASALQTEFFLCSPLACDPSALPVIHKDDDERLQTKRSKRHRVSKRGQPSQTSKSEAAESGKNQIAEQPREDRESSKEKNVEQQKQGQETGYSASSTSSGSRQFTNEGSTNASLSPAFLSSGSVRKSPKAEGNPNALKNIKHYNALLQASMIDMINPSEGSEVPQLPKSFSQLDFRLGPDKLSNLYSLSNKHI*	594

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac9g01097	593	Pfam	Protein kinase domain	130	410	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac9g01097	593	SMART	serkin_6	130	410	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac9g01097	593	MobiDBLite	consensus disorder prediction	465	484	-	-
	Phac9g01097	593	FunFam	probable serine/threonine-protein kinase At1g54610	117	212	-	-
	Phac9g01097	593	MobiDBLite	consensus disorder prediction	33	50	-	-
	Phac9g01097	593	FunFam	Putative serine/threonine-protein kinase	213	448	-	-
	Phac9g01097	593	ProSiteProfiles	Protein kinase domain profile.	130	410	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac9g01097	593	CDD	STKc_CDK9_like	130	410	-	-
	Phac9g01097	593	ProSitePatterns	Protein kinases ATP-binding region signature.	136	159	IPR017441	GO:0005524
	Phac9g01097	593	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	250	262	IPR008271	GO:0004672\|GO:0006468
	Phac9g01097	593	MobiDBLite	consensus disorder prediction	448	462	-	-
	Phac9g01097	593	Gene3D	Transferase(Phosphotransferase) domain 1	213	449	-	-
	Phac9g01097	593	Gene3D	Phosphorylase Kinase; domain 1	119	212	-	-
	Phac9g01097	593	MobiDBLite	consensus disorder prediction	1	67	-	-
	Phac9g01097	593	MobiDBLite	consensus disorder prediction	428	536	-	-
	Phac9g01097	593	SUPERFAMILY	Protein kinase-like (PK-like)	125	412	IPR011009	-
	Phac9g01097	593	MobiDBLite	consensus disorder prediction	485	528	-	-
	Phac9g01097	593	PANTHER	CELL DIVISION PROTEIN KINASE	128	415	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac9g01097	Phac-Chr9	8515134	8520233	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac9g01097	125	442	Core Cell Cycle Gene Families	AT5G10270	45.858	1.89e-96	302

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Phac9g01097		Pkinase	1.5e-70	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac9g01097	K08819		-	gmx:100782603	878.241