Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g01084 ATGGACGACAGCTTATGTGATATTTTCGACGACAAAGAGTTTGGGAGCGACCACTTTGGTGGGGACGATCTCTTCGCCATTTTGGAGAGCCTAGAATCGGACTTCACCCATTTCCCTCCCATTAACGAAGAAGCTGTTGCTATCTCGAAAGAGAACGAGGATGTCTCAAGATTGGTGTCCCAAAAGTCTACCTCGTCAAGTGCTCCACAAGATTATTCCGAAACTGAGTTTGAAACCTCACCAAAAACCAAGAGACAGAAGCTTATTCCTACCACGCCAGAGGAAGCAAACCCAGATGGACAACAGAGGATGTCTCACATCACCGTCGAACGCAACCGGAGAAAGCAAATGAATGAACACTTGTCCGTGTTGAGATCGCTTATGCCTTGCTTTTATGTCAAACGGGGAGATCAAGCATCCATAATTGGAGGTGTGGTTGATTACATCAACGAGTTGCAGCAGGTGCTCCAAGCCCTGGAGGCCAAGAAACAAAGGAAAGTTTACAGCGAAGTCCTAAGCCCTAGGCTTGTTTCAAGCCCAAGGCCCTCACCTCTGAGTCCTCGGAAACCACCTCTGAGCCCGAGACTAAACTTGCCCATTAGCCCAAGAACTCCACAACCAGGAAGCCCTTACAGGCCAAGGTTGCAGCAAGGGTACAACAACATGATTTCACCAACCATGTCCAACTCTCTTGACCCTTCTCCCACTTCTTCTGCTAATTCCTCCATCAACGACAACATCAACGAGCTTGTTGCCAACTCCAAATCCGCTACTGCTGATGTGGAGGTCAAGTTTTCTGGGCCCCACGTTCTTCTCAAAACGGTGTCTCAACGAATTCCCGGACAGGCTCTGAAGATAATCACAGCACTTGAAGATCTCGCGCTAGAAATCCTCCATGTCAACATTAACTGTGCTGCTGATGATACCATGCTAAACTCATTCACTATCAAGGTACATTTCGAATTGGAACACATAAATTAA 981 0.473 MDDSLCDIFDDKEFGSDHFGGDDLFAILESLESDFTHFPPINEEAVAISKENEDVSRLVSQKSTSSSAPQDYSETEFETSPKTKRQKLIPTTPEEANPDGQQRMSHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQVLQALEAKKQRKVYSEVLSPRLVSSPRPSPLSPRKPPLSPRLNLPISPRTPQPGSPYRPRLQQGYNNMISPTMSNSLDPSPTSSANSSINDNINELVANSKSATADVEVKFSGPHVLLKTVSQRIPGQALKIITALEDLALEILHVNINCAADDTMLNSFTIKVHFELEHIN* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g01084 326 MobiDBLite consensus disorder prediction 210 241 - -
Phac9g01084 326 Pfam Helix-loop-helix DNA-binding domain 102 153 IPR011598 GO:0046983
Phac9g01084 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 101 152 IPR011598 GO:0046983
Phac9g01084 326 Coils Coil 145 165 - -
Phac9g01084 326 SMART finulus 107 158 IPR011598 GO:0046983
Phac9g01084 326 MobiDBLite consensus disorder prediction 57 102 - -
Phac9g01084 326 MobiDBLite consensus disorder prediction 58 76 - -
Phac9g01084 326 CDD bHLH_AtFAMA_like 104 175 - -
Phac9g01084 326 MobiDBLite consensus disorder prediction 174 241 - -
Phac9g01084 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 100 175 IPR036638 GO:0046983
Phac9g01084 326 Gene3D - 93 166 IPR036638 GO:0046983
Phac9g01084 326 FunFam Transcription factor SPEECHLESS 93 167 - -
Phac9g01084 326 PANTHER TRANSCRIPTION FACTOR FAMA 4 322 IPR044283 GO:0003700|GO:0010052
Phac9g01084 326 MobiDBLite consensus disorder prediction 180 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g01084 Phac-Chr9 8310979 8314550 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g01084 1 319 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 52.198 8.09e-94 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac9g01084 HLH 7.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g01084 K20558 - gmx:100777437 528.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac9g01084 9 8310979 8314550 Phac9g01084 9 8310979 8314550 ECH