Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g00971 ATGTCTGTGCACTCTAAGCAGCTGCTACTGCAGGTGCTTCTTGTTGCCCTCCTTATTGCAAAAACTAAAACTCAAGCCATTCCAAACCCAAACTGTTCTTCAAAGTGTGGCGATGTCACCATTCCCTTCCCCTTCGGCATGTCCGACACTTGTTCCTTAGACACCTCATTTCTCCTCACTTGCAACCAAACATCTCCTTCATCACACACCCTTTTCCTGCCACAAACCAATATAACTGTGCTTAACATCTCACTCGACGGCCACATGCAAATTTCATGGCCTGTGGCCAGCGACTGCTACGCCGACAGAGGCAAACTCGTGAGGGAATCATTTCAAGACCTAAACCTCACAACTTTTCAAGTCTCTTCCAACAGAAACAGGTTGACTGTAATTGGGTGTGACACGTTTGGAATAGTGGAGGGAAGCGATTTGGAGGGAAAGAACTACACCGTGGGATGCATTTCCTTGTGCAACAGGCTCCAAGACATCCAAACAAACGGGACTTGTTCCGGCACCGGTTGTTGCGAGACTTCGATCCCACGCGGGTTGTCGAGTTTCTCCTACGGTTCTGGGAGTTTGTTCAACCACACGGACGTAATGGACTTCAACCCGTGCGGGTATGCGTTCCTGGTGGAAGATGGGGCCTACAATTTCTCCTCCACGGACCTCGTCAAGTTCGACAAAACCACGTTCCCCGTGGTGGTGGATTGGGCGGTTAAGAACCAAACGTGCGTAGACGCTAAGAAAGAGGCTTCCAATTACGCGTGTAAGGCAGAGAACAGTGATTGTTTCCATTCAGTTGAAGGATCTGGTTACCTTTGCAGATGCTCAAATGGTTTCCAGGGAAACCCTTATCTTCTTCATGGTTGTCAAGATGTTAATGAATGCATGGGATCCAACGATTGCGTAGATGGGGCCAAATGCAGTAACTCTCCTGGTGGTTATAACTGTTTATGCCCAAAAGGATTTGAAGGAGATGGACAAAAATATGGAACAAGATGCACTCACAAATCTAGCATCAACTCAAGGAAAGAAATCATACTCATAATTGCTTTGAGTGTGAGTGTAAGCCTAGTGGCACTACTTGTGGGAAGCTTTTATGTGCATTGGGCATCAAAGAAAAGAAAGATCATTCAACTTAAAGAACAATTTTTTCAACAAAATGGTGGTCTTTTCTTACAACAACACATAATCAAGCATAAAGGATCAATTGAAACGGCTAAAGTCTTCACTGTAGAGGAGCTAAAAGACGCCACCGACAACTTTGATGAAGGCAAGATCCTTGGCCAAGGTGGTCAAGGAACAGTTTACAAAGGAGTATTGCTGGACAATAGAACTGTGGCAATTAAGAAGTCTAAAATCAGCGATCCAAATCAGATTGAGCAATTCATTAACGAGGTGATTGTGCTTTCCCAAATCAGTCATAGGAACACTACAAAAAAAACTTTTATTAGAAAGGGCCAAAGGCTGACACTAATCACAAAAAGCCCACGCAAAAATGCAATTAACGTGGGCTTTGCCTTCACACAACTTTGA 1536 0.4466 MSVHSKQLLLQVLLVALLIAKTKTQAIPNPNCSSKCGDVTIPFPFGMSDTCSLDTSFLLTCNQTSPSSHTLFLPQTNITVLNISLDGHMQISWPVASDCYADRGKLVRESFQDLNLTTFQVSSNRNRLTVIGCDTFGIVEGSDLEGKNYTVGCISLCNRLQDIQTNGTCSGTGCCETSIPRGLSSFSYGSGSLFNHTDVMDFNPCGYAFLVEDGAYNFSSTDLVKFDKTTFPVVVDWAVKNQTCVDAKKEASNYACKAENSDCFHSVEGSGYLCRCSNGFQGNPYLLHGCQDVNECMGSNDCVDGAKCSNSPGGYNCLCPKGFEGDGQKYGTRCTHKSSINSRKEIILIIALSVSVSLVALLVGSFYVHWASKKRKIIQLKEQFFQQNGGLFLQQHIIKHKGSIETAKVFTVEELKDATDNFDEGKILGQGGQGTVYKGVLLDNRTVAIKKSKISDPNQIEQFINEVIVLSQISHRNTTKKTFIRKGQRLTLITKSPRKNAINVGFAFTQL* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g00971 511 Pfam Calcium-binding EGF domain 292 334 IPR001881 GO:0005509
Phac9g00971 511 ProSiteProfiles EGF-like domain profile. 292 335 IPR000742 -
Phac9g00971 511 SUPERFAMILY Protein kinase-like (PK-like) 408 480 IPR011009 -
Phac9g00971 511 Pfam Wall-associated receptor kinase galacturonan-binding 32 88 IPR025287 GO:0030247
Phac9g00971 511 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 308 319 IPR000152 -
Phac9g00971 511 ProSiteProfiles Protein kinase domain profile. 422 511 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac9g00971 511 PANTHER OSJNBA0016N04.9 PROTEIN 8 319 - -
Phac9g00971 511 Gene3D Laminin 238 334 - -
Phac9g00971 511 SMART egf_5 255 291 IPR000742 -
Phac9g00971 511 SMART egf_5 295 335 IPR000742 -
Phac9g00971 511 CDD EGF_CA 292 326 - -
Phac9g00971 511 Gene3D Phosphorylase Kinase; domain 1 394 493 - -
Phac9g00971 511 FunFam Fibrillin 2 287 330 - -
Phac9g00971 511 ProSitePatterns Calcium-binding EGF-like domain signature. 292 317 IPR018097 GO:0005509
Phac9g00971 511 SUPERFAMILY EGF/Laminin 291 329 - -
Phac9g00971 511 SMART egfca_6 292 335 IPR001881 GO:0005509
Phac9g00971 511 Pfam Protein tyrosine and serine/threonine kinase 425 494 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g00971 Phac-Chr9 7446408 7448278 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g00971 1 480 Receptor kinase-like Gene Family AT1G21250 39.228 1.80e-104 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Phac9g00971 PK_Tyr_Ser-Thr 3e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g00971 - - var:108330433 860.907