Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g00957 ATGAATAGTGAGGTGAGTCAGGTGACAATTAATGATGAGAATTGTGTCACTGAAGAGGGACAACATTTGAATAGTGAAGCCATGAATGGTGAGGGGGCAATTGCTCATGCAAATGGTGTTGCTGGAGAGGTTAGGGTCTTGAGAAAACCCTTTAGTAATGGGGTGGCAGTTGGAGATAAAGGTGGCTCTGGTGGAGTGGAATGTTTGCGAACTTATAAGAGGCGTAAGAAGTCAAGTTCAACAGGCAAAATTCAGGAACAATGCAGAGCAGGCATGACAACTGCAAGTCGATTAGCAGATCAGGGTGTGAAGAAACCGTGTGATCTAGCTTTAGGCAATACTTCAGATGATTGTTCCCAAGAAAAGTGGGGAAATATTGTACTCCAGCATTTATATCAGTCATTAGGTGATGGCAATGGCGGTGTGGAGGGGTGCATTAGGGAAGCACTTAATCCAAAACATAATCATGCCACTACTGTGATGGACGCCTTTATAATTGAAAAGGATGGTCAAGAATGTTATTCACAATCTGAGCGGCTTTCTCATAGAACAGGGAAGGAAGCTAATGGACATGCAGATGTCATGTGTAATGGATGTTCCAGTGAATTACCTGACCATGGTGTGACTGAGATGTGTCAGCGCGTGCTCTGTAATATCTTAACCTCAGAAAAATTCCGTTCATTGTGTAAGGCTTTACTTGAAAATTTCCAGGGAATGAAGCCTGAAAGTGTATTTGACTTTACCATTATGAACTCAAGGATGAAGGAGCAAGCTTATGAACAATCCCCAGCACTCTTCTTGTCAGATATTCAACAGGTTTGGAGAAAGCTTCAAGACACTGGTAATGAGATGGTTGCTCTTGCCAAGAGCCTATCCAGCATGTCAACAACTTCCTACTCTGAGCTGGTAGGAGTTTCAGCACCGAGCACATTTCAAGATGGGAAGCAGCCGTCCTGCAACCGAGAAGGCTCTCACATGAAACCAGAACAGACGCAAGAATGTGCTATGTGCAAAATCGGAAGTTGCAGCCGTTGTGGAGAGAATGCAGATGGCAAAGACTGTTTAGTTTGTGATTCATGTGAGGAGATATACCATGTGTCCTGTATTGAGCCGGCAGTGAAAGAAATAATACCCCACAAAAGCTGGTATTGTGCCAAGTGTACTGCTAATGGGATTGGATCTCCACATGAGAATTGTGTATTATGTGAAAGGTTAAATGATGAACAGACTCCAAATGACATAATTGATGATGAAAGCTTTCCTACAATTAAGGAAACAAAAAATGAACTTGAAGAAAATTCAAAGTGCACCTCTGATGGGACTAAAGTTTCTGTAGGTGAGAAAACAACACCCAGTTGCAAAGTTTGCAGAAATGAAGTGGATGGTAAAAAGATAAAAAAGATAAGAGTATGTGGCCATAGGTTTTGCTCCAACAAGTACTACCATGTAAGGTGTTTAACAAAGAAGCAGGCAAAGTCATATGGTCACTGTTGGTACTGCCCTTCTTGTTTATGCTCTGTTTGCTTAATTGATCGAGATGATGATCAGATTGTTATCTGTGATGGTTGTGATCGTGGATATCACATCTATTGTTTGACACCTCCACAGGCTTCTATTCCAAGCGGGAAATGGTTCTGCAGACTCTGTGATGCTGGGATACAAGCAATTCACAAGGCTAAAAAGGCATATGAATGTAACGAGCCAAGCAGAAAAAGGGAACATGCTGCTGCTAAGCCAAATGCTAAACGTGAAAAGAAACACAGAAATAAACGAGCAAGAGATTTGGAAAGAGGTGGTGCAATGGACATGCTTTTAACCGCAGCCAATTCCCTGAATTTTGAGGAGAAAGAGGCTGCAATCCAAATTGAGTCGCAGACATGA 1881 0.4216 MNSEVSQVTINDENCVTEEGQHLNSEAMNGEGAIAHANGVAGEVRVLRKPFSNGVAVGDKGGSGGVECLRTYKRRKKSSSTGKIQEQCRAGMTTASRLADQGVKKPCDLALGNTSDDCSQEKWGNIVLQHLYQSLGDGNGGVEGCIREALNPKHNHATTVMDAFIIEKDGQECYSQSERLSHRTGKEANGHADVMCNGCSSELPDHGVTEMCQRVLCNILTSEKFRSLCKALLENFQGMKPESVFDFTIMNSRMKEQAYEQSPALFLSDIQQVWRKLQDTGNEMVALAKSLSSMSTTSYSELVGVSAPSTFQDGKQPSCNREGSHMKPEQTQECAMCKIGSCSRCGENADGKDCLVCDSCEEIYHVSCIEPAVKEIIPHKSWYCAKCTANGIGSPHENCVLCERLNDEQTPNDIIDDESFPTIKETKNELEENSKCTSDGTKVSVGEKTTPSCKVCRNEVDGKKIKKIRVCGHRFCSNKYYHVRCLTKKQAKSYGHCWYCPSCLCSVCLIDRDDDQIVICDGCDRGYHIYCLTPPQASIPSGKWFCRLCDAGIQAIHKAKKAYECNEPSRKREHAAAKPNAKREKKHRNKRARDLERGGAMDMLLTAANSLNFEEKEAAIQIESQT* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g00957 626 SMART PHD_3 341 388 IPR001965 -
Phac9g00957 626 SMART PHD_3 505 550 IPR001965 -
Phac9g00957 626 SMART PHD_3 452 504 IPR001965 -
Phac9g00957 626 PANTHER OS02G0192300 PROTEIN 253 461 - -
Phac9g00957 626 SUPERFAMILY FYVE/PHD zinc finger 504 552 IPR011011 -
Phac9g00957 626 SUPERFAMILY FYVE/PHD zinc finger 338 390 IPR011011 -
Phac9g00957 626 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 444 556 IPR013083 -
Phac9g00957 626 ProSiteProfiles Zinc finger PHD-type profile. 502 552 IPR019787 -
Phac9g00957 626 FunFam PHD finger protein EHD3 isoform A 230 391 - -
Phac9g00957 626 Gene3D - 230 391 - -
Phac9g00957 626 ProSiteProfiles Zinc finger PHD-type profile. 339 390 IPR019787 -
Phac9g00957 626 MobiDBLite consensus disorder prediction 570 597 - -
Phac9g00957 626 Pfam PHD-finger 342 389 IPR019787 -
Phac9g00957 626 Pfam PHD-finger 505 550 IPR019787 -
Phac9g00957 626 ProSiteProfiles Zinc finger RING-type profile. 453 503 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g00957 Phac-Chr9 7319055 7326584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g00957 504 573 C2H2 Transcription Factor Family AT3G01460 42.857 4.29e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phac9g00957 PHD 1.1e-12 CL0390