LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac9g00918	ATGAGCTTATTGAGGTCTTCTGCAATATACAACTTTGTAACAAATTATCCTGCACTGCGATGGATGCCATGTCAGAGTTGGGGCTTCCTTCGATGGCCGGGTCTTGACGGATTCCTTCGGCTTTTGGTCGTCGGACTTCTCTGGTCCACGTTCTCCGAGCTTCGCTTCATACCCTCCTCTTCCATGTTCCCCACCCTTCGTGTTGGTGATCGAATTATTGTGGAAAAGGCTTCATATTATATCAAGAATCCTTCTATACATGATATTGTAACATTTAAGGATCCAACACAGTTATATGGAGAAAACACAGAAACTGTTTTTATTAAGAGAATTGTAGCAAAAGCAGGAGACGCTGTTGAGGTTCATGATGGGGTACTCTACATCAATGGTGTTGCTCAGCAGGAAGATTTTATAGCACAACCACCAACATACACAATCCCATTAACTACTGTGCCCAAGGGCCATGTTTATGTGCTAGGGGATAATCGTAATAATAGTTATGATTCTCATGTGTGGTAA	519	0.4239	MSLLRSSAIYNFVTNYPALRWMPCQSWGFLRWPGLDGFLRLLVVGLLWSTFSELRFIPSSSMFPTLRVGDRIIVEKASYYIKNPSIHDIVTFKDPTQLYGENTETVFIKRIVAKAGDAVEVHDGVLYINGVAQQEDFIAQPPTYTIPLTTVPKGHVYVLGDNRNNSYDSHVW*	173

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac9g00918	172	SUPERFAMILY	LexA/Signal peptidase	51	172	IPR036286	-
	Phac9g00918	172	ProSitePatterns	Signal peptidases I signature 3.	156	169	IPR019758	GO:0004252\|GO:0016020
	Phac9g00918	172	Pfam	Signal peptidase, peptidase S26	39	172	IPR019533	GO:0004252\|GO:0006465
	Phac9g00918	172	NCBIfam	signal peptidase I	41	171	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Phac9g00918	172	PANTHER	SIGNAL PEPTIDASE I	37	172	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Phac9g00918	172	FunFam	Peptidase/ serine-type peptidase	59	172	-	-
	Phac9g00918	172	Gene3D	Umud Fragment, subunit A	59	172	-	-
	Phac9g00918	172	CDD	S26_SPase_I	53	172	IPR019533	GO:0004252\|GO:0006465
	Phac9g00918	172	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	107	119	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Phac9g00918	172	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	151	170	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Phac9g00918	172	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	50	66	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Phac9g00918	172	ProSitePatterns	Signal peptidases I serine active site.	59	66	IPR019756	GO:0004252\|GO:0016020

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac9g00918	Phac-Chr9	7020548	7024283	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac9g00918	62	170	MADS-box Gene Family	AT1G29960	33.636	3.57e-07	45.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac9g00918	K03100		-	gmx:100306121	301.982

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phac9g00918	9	7020548	7024283	Phac9g00918	9	7020548	7024283	ECH