Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g00913 ATGAGTATTCTGGGCGATTTTAGTGCGTGGGTTCTCAATAAATATAGACAAACATGTGTGTTTTTCTGTACGATGGTTAGTGGATGGTTTTGGAAACGTTGTTCGTCGGAGAAGAAAGTGTGTGAAAATAAGACGGTGTCAATCATGCAGAGCTCTCAGCAATGGGTCGAGAAATACCGACCAAGGAAAGTGAAAGATGTTGCCCACCAAGAAGAAGTTGTTCGAGTGCTAACAAATACCCTTGAAACTGGAAGTTGCCCCCACATGCTCTTCTATGGTCCTCCCGGCACTGGAAAAACAACTACTGCCCTTGCAATTGCCCACCAGCTTTTCGGGCCTGAGCTCTATAAGTCCAGGGTGCTGGAGCTGAATGCAAGTGATGATAGAGGGATTAACGTTGTTCGTACAAAGATAAAAGATTTTGCTGCTGTGGCTGTTGGTACTAACAAGCGTAGGGAGGGTCATCCTTGTCCACCATTTAAGATTATTGTTCTAGATGAGGCTGATTCAATGACAGAAGATGCTCAGAATGCCCTGAGGCGTACGATGGAAACTTACTCTAAAGTTACAAGGTTCTTTTTTATATGCAATTATGTGAGCAGGATTATAGAACCACTTGCTTCAAGATGTGCAAAATTCAGGTTCAAGCCATTGTCAGAAGAAATCATGAGCAGCCGGATATTGTACATATGCAAAGAAGAGGAACTCTGTCTTGATGCTGAGGCTCTTTCAACCCTTAGTTCTATTTCTCATGGAGATCTTCGCCGGGCAATCACATACTTGCAGTCTGCAGCTCGCTTATTTGGATCTTCAATTTCTTCAGAGAATCTGATTTCTGTGTCTGGGGTTGTTCCAGAAAAAGTTGTGGAGGCAGTTCTTCAAGCTTGCAGAAGTGGTAATTTTGATTTGGCAAACAAGTCAGTCAACAATTTCATTGCAGAGGGATATCCAGCTTCTCAAATGCTTACTCAGTTATTTGATGCCATTGTTGAAGATAATGATATATCAGATGAACAGAAAGCAAGAATAGCCAAGAAGTTGGGTGAAGCTGATAAGTGTCTAGTTGATGGTGCTGATGAATACTTGCAACTTCTCGATGTGGTCAGCAATATAATGCAGGCTTTTAGCAACATGCCAGAAGGATTTGCTTACGAATGTTAG 1161 0.422 MSILGDFSAWVLNKYRQTCVFFCTMVSGWFWKRCSSEKKVCENKTVSIMQSSQQWVEKYRPRKVKDVAHQEEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNKRREGHPCPPFKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMSSRILYICKEEELCLDAEALSTLSSISHGDLRRAITYLQSAARLFGSSISSENLISVSGVVPEKVVEAVLQACRSGNFDLANKSVNNFIAEGYPASQMLTQLFDAIVEDNDISDEQKARIAKKLGEADKCLVDGADEYLQLLDVVSNIMQAFSNMPEGFAYEC* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g00913 386 FunFam Replication factor C subunit 4 220 283 - -
Phac9g00913 386 Gene3D - 284 374 - -
Phac9g00913 386 Gene3D - 46 217 IPR027417 -
Phac9g00913 386 FunFam Replication factor C subunit 5 47 218 - -
Phac9g00913 386 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 53 365 - -
Phac9g00913 386 Pfam ATPase family associated with various cellular activities (AAA) 89 216 IPR003959 GO:0005524|GO:0016887
Phac9g00913 386 FunFam Replication factor C subunit 4 284 373 - -
Phac9g00913 386 SUPERFAMILY post-AAA+ oligomerization domain-like 284 373 IPR008921 GO:0003677|GO:0006260
Phac9g00913 386 CDD HLD_clamp_RFC 218 277 - -
Phac9g00913 386 CDD AAA 70 210 - -
Phac9g00913 386 SMART AAA_5 85 234 IPR003593 GO:0016887
Phac9g00913 386 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 52 276 IPR027417 -
Phac9g00913 386 Gene3D - 220 283 - -
Phac9g00913 386 Pfam Replication factor C C-terminal domain 284 369 IPR013748 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g00913 Phac-Chr9 6978616 6988350 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g00913 48 382 Core DNA Replication Machinery Family AT1G21690 76.786 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g00913 K10755 - gmx:100798331 620.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac9g00913 9 6978616 6988350 Phac9g00913 9 6978616 6988350 ECH