Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g00876 ATGACGACCCATCCCATGGAAATCGACAGCGACGGCGATGACCACACACACTCCGCCGGCGAATGTGTCATGGTTGCCGAAGACCTTCCCGCTTTCGACAAGGCCATTCCGTGGGTTGAAAAATACCGCCCTCAGTCCCTCGACGACGTGGCCGCTCACCGTGACATTGTTGATACCATTGATAGGCTGACCACAGAGAACCGATTGCCGCATCTTTTATTGTATGGCCCTCCTGGAACGGGCAAAACATCAACCATTCTCGCAGTGGCACGCAAACTATATGGTTCACGCTTCCGCAATATGATTTTGGAGCTCAATGCATCAGATGACAGAGGAATTGATGTCGTGCGACAGCAGATTCAAGATTTTGCTAGCACTCAGAGCTTATCATTTGGTGTTAAGTACTCTGTAAAACTGGTATTGTTAGATGAAGCAGATGCCATGACAAAGGATGCCCAATTTGCATTACGTAGAGTGATTGAGAAATATACAAAAAGCACCAGGTTTGCTCTTATCTGTAATCATGTAAACAAGATTATTCCTGCACTTCAATCTAGATGCACTCGGTTTCGGTTTGCCCCTCTTGACGCTGTCCATGTCACTGAAAGAATGAAACATGTTATTAAGGCTGAAGGGCTTGATGTTCAAGATGATGGCTTAGTAGCCCTTGTTCGGCTTAGCAATGGTGATATGAGAAAGGCTTTGAATATTCTTCAGTCAACACATATGGCTACTGAGGAGATAACAGAAGAAGCTGTTTACCTGTGCACTGGAAATCCATTGCCCAAAGACATTGAGCAGATATCTTACTGGCTTCTAAACGAACAATTTACAGATAGCTTTAAAAGAATAGAAGAAATGAAGACCAGGAAAGGGTTGGCCCTGGTTGATATTATCAGAGAAGTGATAATGTTTGTTTTTAAGATTAAGATGCCTTCAGCTGTTCGAGTACAATTGATGAATGATTTGGCAGACATAGAGTACAGATTAAGTTTTGGGTGCAACGATAAGCTTCAGCTTGGATCGGTCATTGCTTCTTTTACACGTGCTAGATCCGCACTGGTTGCAGCTGCTACATAG 1080 0.4398 MTTHPMEIDSDGDDHTHSAGECVMVAEDLPAFDKAIPWVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGSRFRNMILELNASDDRGIDVVRQQIQDFASTQSLSFGVKYSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERMKHVIKAEGLDVQDDGLVALVRLSNGDMRKALNILQSTHMATEEITEEAVYLCTGNPLPKDIEQISYWLLNEQFTDSFKRIEEMKTRKGLALVDIIREVIMFVFKIKMPSAVRVQLMNDLADIEYRLSFGCNDKLQLGSVIASFTRARSALVAAAT* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g00876 359 FunFam Replication factor C subunit 5 30 195 - -
Phac9g00876 359 Pfam ATPase family associated with various cellular activities (AAA) 72 192 IPR003959 GO:0005524|GO:0016887
Phac9g00876 359 SMART AAA_5 68 198 IPR003593 GO:0016887
Phac9g00876 359 CDD AAA 56 194 - -
Phac9g00876 359 CDD HLD_clamp_RFC 195 257 - -
Phac9g00876 359 FunFam Replication factor C subunit 5 197 259 - -
Phac9g00876 359 FunFam Replication factor C subunit 5 260 357 - -
Phac9g00876 359 Gene3D - 31 194 IPR027417 -
Phac9g00876 359 Gene3D - 260 357 - -
Phac9g00876 359 Pfam Replication factor C C-terminal domain 260 346 IPR013748 -
Phac9g00876 359 Gene3D - 198 259 - -
Phac9g00876 359 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 37 341 - -
Phac9g00876 359 SUPERFAMILY post-AAA+ oligomerization domain-like 260 350 IPR008921 GO:0003677|GO:0006260
Phac9g00876 359 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 253 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g00876 Phac-Chr9 6636511 6642068 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g00876 30 358 Core DNA Replication Machinery Family AT1G77470 81.009 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g00876 K10756 - gmx:100782652 630.172