Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g00875 ATGGCATCAGAGCTTCAACTGCCCCCGGGCTTCAGATTCCATCCAACTGACGAGGAGCTCGTGATGCACTATCTCTGCCGCAAATGCGCCTCGCAGCCCATCGCCGTTCCCATCATCGCCGAAATCGACCTCTACAAATACGACCCTTGGGACCTTCCCGGATTGGCTTCTTACGGAGAGAAGGAGTGGTACTTCTTTTCACCGCGGGACCGGAAGTACCCGAACGGTTCGAGGCCGAACCGGGCGGCGGGAAGCGGTTACTGGAAGGCAACCGGGGCGGATAAGCCAATTGGTCAGCCGAAAGCGGTTGGGATAAAGAAAGCGTTGGTGTTTTACGCTGGGAAAGCTCCGAAAGGGGACAAAAGCAATTGGATCATGCACGAGTATCGTCTGGCTGATGTAGATCGCTCCGTTCGCAAAAAGAACAGCCTAAGGGTATGGGCAATGATACAATCCCAAATTTTTATAAAATCAAAATAA 480 0.5271 MASELQLPPGFRFHPTDEELVMHYLCRKCASQPIAVPIIAEIDLYKYDPWDLPGLASYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGQPKAVGIKKALVFYAGKAPKGDKSNWIMHEYRLADVDRSVRKKNSLRVWAMIQSQIFIKSK* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g00875 159 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 139 - -
Phac9g00875 159 Gene3D NAC domain 16 159 IPR036093 GO:0003677|GO:0006355
Phac9g00875 159 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Phac9g00875 159 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Phac9g00875 159 SUPERFAMILY NAC domain 3 134 IPR036093 GO:0003677|GO:0006355
Phac9g00875 159 FunFam NAC transcription factor 16 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g00875 Phac-Chr9 6626850 6630287 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g00875 1 157 NAC Transcription Factor Family AT1G01720 86.076 1.14e-97 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phac9g00875 NAM 5.7e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g00875 - - gmx:100805768 304.293