Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g00870 ATGGCGTCAAAGGTTGTGTTCTCCCTGTTGGTGACTTTGGCCATTACCATCCCATGCCTTGAGGCTGGCATTGCTGAATTTGATGACTTTCTTAAAGCTCAATCTGAGAAAGCCCACAAAATCGCTCTTGAGTCCTATGTACCAACACCCGAGTTCATCACCAGTGAACTGAATTACCACGTCCATCTTTCAATGCAGAACAGCACAAGGAGGGGACTGAAGGCAGGGAACAATGACGCCGGAGCGCCTTGTGAGAGCAGCAACCCCATTGACAACTGCTGGAGGTGCAACAAAGACTGGGCCAATGACAGGTACAGGCTAGCCAAATGCGGAAAAGGGTTCGGAAGACGCGCAGTCGGAGGCCTCGGTGGACCCATCTATGTGGTCACTGATAATTCCGACGAGGACATGGTTAACCCCAAAGAAGGAACCCTCCGATATGGTGTCACTCAAAAGGGTCCATTGTGGATCACCTTCGCACGCAGCATGATCATCACTCTTCAACAGGAGCTGTTGATTTCCTCCGACAAGACCATCGATGGTCGTGGCGCCAACGTTCAGATCAGGGATGGTGCTGGCCTCACTATGCAATTCGTGAACAACGTTATCATCCACGGGATTCGCGTGAAGAACATTGTGTCTAAGGAGGGTGGCATGATCAGGGACTCTTACAACCACGTTGGACTGAGAACCAGGAGTGATGGTGATGCCATCTCCGTTTTCGGTGCCTCCAACATCTGGATCGATCATGTTTCCCTCTCCAACTCTGCTGACGGACTTATCGATGTCATCCAAGGCTCCACTGCCATCACCATCTCTAACTGCCACATGACCAGACATAACGACGTGATGCTGTTTGGTGCTACTGATACCTACTCTGGAGACAAGATCATGCAGATTACAGTGGCATTCAACCACTTCGGGCAGGGACTGATCCAGAGGATGCCAAGGTGCAGAATGGGATTCTTTCACGTTCTGAACAACGATTACACTCACTGGATGATGTACGCAATAGGAGGAAGCGCAGCGCCAACCATTCTCAGCCAGGGAAACCGATTCATTGCCCCCAACAACGACGCTGCAAAGGAGATAACGCACAGGGTCGACGCAACACCAGAAGTGTGGAAGAACTGGCAGTGGCAATCAGACATGGACCTATTGATGAATGGTGCCAAGTTCAACACTTCAGGGTCACCAATAACGACGCAATACAAGAAGGGTCTGATAATGAAGCCAAGAGACGGCACTCACGTCAGCAGGCTTACACGGCATGCTGGTGCCCTCAACTGCTTTGTTGGGTTGCCTTGCTAG 1311 0.5095 MASKVVFSLLVTLAITIPCLEAGIAEFDDFLKAQSEKAHKIALESYVPTPEFITSELNYHVHLSMQNSTRRGLKAGNNDAGAPCESSNPIDNCWRCNKDWANDRYRLAKCGKGFGRRAVGGLGGPIYVVTDNSDEDMVNPKEGTLRYGVTQKGPLWITFARSMIITLQQELLISSDKTIDGRGANVQIRDGAGLTMQFVNNVIIHGIRVKNIVSKEGGMIRDSYNHVGLRTRSDGDAISVFGASNIWIDHVSLSNSADGLIDVIQGSTAITISNCHMTRHNDVMLFGATDTYSGDKIMQITVAFNHFGQGLIQRMPRCRMGFFHVLNNDYTHWMMYAIGGSAAPTILSQGNRFIAPNNDAAKEITHRVDATPEVWKNWQWQSDMDLLMNGAKFNTSGSPITTQYKKGLIMKPRDGTHVSRLTRHAGALNCFVGLPC* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g00870 436 Gene3D - 87 429 IPR012334 -
Phac9g00870 436 Pfam Pectate lyase 171 353 IPR002022 -
Phac9g00870 436 SMART amb_all 162 359 IPR002022 -
Phac9g00870 436 SUPERFAMILY Pectin lyase-like 88 427 IPR011050 -
Phac9g00870 436 PRINTS Pollen allergen Amb family signature 110 127 IPR018082 -
Phac9g00870 436 PRINTS Pollen allergen Amb family signature 234 255 IPR018082 -
Phac9g00870 436 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Phac9g00870 436 PRINTS Pollen allergen Amb family signature 407 430 IPR018082 -
Phac9g00870 436 PRINTS Pollen allergen Amb family signature 336 355 IPR018082 -
Phac9g00870 436 PRINTS Pollen allergen Amb family signature 134 159 IPR018082 -
Phac9g00870 436 PRINTS Pollen allergen Amb family signature 378 402 IPR018082 -
Phac9g00870 436 PRINTS Pollen allergen Amb family signature 170 186 IPR018082 -
Phac9g00870 436 PANTHER PECTATE LYASE 18-RELATED 38 433 IPR045032 GO:0030570
Phac9g00870 436 Pfam Pectate lyase, N terminus 24 73 IPR007524 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g00870 Phac-Chr9 6591900 6593700 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g00870 5 436 Polysaccharide Lyase AT1G14420 56.473 1.49e-175 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g00870 K01728 - gmx:100785801 735.717