Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g00839 ATGTCGTTGAGTCCTCCGAGAGAGAGATCCAATGGGCATGGCCGAAGGCGAGAGAGGCCAACATTCCAAATGTACTGGTGCTTCCAGTGCAACCGCATGGTCCGCATCGCAGTGGATAACAACCCCTCAGAGGTCACGTGTCCACGCTGCTTCGGCCAATTCATATGCGAAGTAAACGTGCCGCGCCCAAGACTGGTGGTGGATTTCACTACCCCAGACCCCTCCCCAGAAGCGCGTTTGCTCGAAGCGCTTTCCCTCATGATGGAACCACCCATCCGCCGCTTCCCGGGCCTCCTCCAATCCCAACCAGAAGAGGTCCCCGTGCACCACCGCCGCCGCCGCTTCCGTCGACGCCAACCCGAACCTGAACCCGTCCCTGAACCTGCACACCACCGCCCTCGCACGTGGATAGTTTTCCAGCCCATGGACCAACCCAACCCCTTCCTGCCCATTAACAACATTCCTAACGGCCCCGGTCCAGGCCAATTCCCATTCCCGCTCCCGCGCACCGTGGACACGCGCGACTATTTCATGGGACCTGGACTCAACGAACTCATCGAACAGATAACCGAGAACGACAGACAGGGTCCCGCGCCGGCGCCGGAAAGGGCCATCGACGCGATTCCGACGGTGAAAATTGCGAGCGCGCATCTGAAGGAGAATTCTCAGTGTCCAGTTTGTCAGGAGGAATTCGAAGTTGGCGGAGAAGCGAGGGAGCTTGCGTGCAAACACATATATCACTCGGATTGCATTGTTCCGTGGCTGAGGCTTCACAATTCTTGCCCAGTGTGCCGTCACGAGGTTTCTGTGCCGACTTCTTCTTCGGAGGATGAGTGTGTTGATGTTAGCGGAGATGAAGGTAGGTTGCGGAGGTGCTTGAGGTGGACCCGTCGTTTTACTTCGGTTTGGCCTTTCAATTCGAGGTATAGACGGGTTCACCCTCAAGGAAATAATAATGTTGCTGCTGCTTCTTCCAGGGGTGAATCATAA 990 0.5667 MSLSPPRERSNGHGRRRERPTFQMYWCFQCNRMVRIAVDNNPSEVTCPRCFGQFICEVNVPRPRLVVDFTTPDPSPEARLLEALSLMMEPPIRRFPGLLQSQPEEVPVHHRRRRFRRRQPEPEPVPEPAHHRPRTWIVFQPMDQPNPFLPINNIPNGPGPGQFPFPLPRTVDTRDYFMGPGLNELIEQITENDRQGPAPAPERAIDAIPTVKIASAHLKENSQCPVCQEEFEVGGEARELACKHIYHSDCIVPWLRLHNSCPVCRHEVSVPTSSSEDECVDVSGDEGRLRRCLRWTRRFTSVWPFNSRYRRVHPQGNNNVAAASSRGES* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g00839 329 ProSiteProfiles Zinc finger RING-type profile. 224 265 IPR001841 -
Phac9g00839 329 MobiDBLite consensus disorder prediction 104 131 - -
Phac9g00839 329 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 121 268 - -
Phac9g00839 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 271 IPR013083 -
Phac9g00839 329 SUPERFAMILY RING/U-box 204 272 - -
Phac9g00839 329 Pfam zinc-ribbon 23 57 IPR039525 GO:0061630
Phac9g00839 329 FunFam E3 ubiquitin-protein ligase RING1-like 187 271 - -
Phac9g00839 329 SMART ring_2 224 264 IPR001841 -
Phac9g00839 329 Pfam Ring finger domain 223 265 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g00839 Phac-Chr9 6250696 6253517 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g00839 196 313 C3H Transcription Factor Family AT1G68180 44.538 3.24e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g00839 K11982 - gmx:100787399 401.364