Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g00837 ATGTCGTTGAGTCCTCCGAGAGAGAGATCCAATGGGCATGGCCGAAGGCGAGAGAGGCCAACATTCCAAATGTACTGGTGCTTCCAGTGCAACCGCATGGTCCGCATCGCAGTGGATAACAACCCCTCAGAGGTCACGTGTCCACGCTGCTTCGGCCAATTCATATGCGAAGTAAACGTGCCGCGCCCAAGACTGGTGGTGGATTTCACTACCCCAGACCCCTCCCCAGAAGCGCGTTTGCTCGAAGCGCTTTCCCTCATGATGGAACCACCCATCCGCCGCTTCCCGGGCCTCCTCCAATCCCAACCAGAAGAGGTCCCCGTGCACCACCGCCGCCGCCGCTTCCGTCGACGCCAACCCGAACCTGAACCCGTCCCTGAACCTGCACACCACCGCCCTCGCACGTGGATAGTTTTCCAGCCCATGGACCAACCCAACCCCTTCCTGCCCATTAACAACATTCCTAACGGCCCCGGTCCAGGCCAATTCCCATTCCCGCTCCCGCGCACCGTGGACACGCGCGACTATTTCATGGGACCTGGACTCAACGAACTCATCGAACAGATAACCGAGAACGACAGACAGGGTCCCGCGCCGGCGCCGGAAAGGGCCATCGACGCGATTCCGACGGTGAAAATTGCGAGCGCGCATCTGAAGGAGAATTCTCAGTGTCCAGTTTGTCAGGAGGAATTCGAAGTTGGCGGAGAAGCGAGGGAGCTTGCGTGCAAACACATATATCACTCGGATTGCATTGTTCCGTGGCTGAGGCTTCACAATTCTTGCCCAGTGTGCCGTCACGAGGTTTCTGTGCCGACTTCTTCTTCGGAGGATGAGTGTGTTGATGTTAGCGGAGATGAAGGTAGGTTGCGGAGGTGCTTGAGGTGGACCCGTCGTTTTACTTCGGTTTGGCCTTTCAATTCGAGGATATTTTGCATCTGA 939 0.5719 MSLSPPRERSNGHGRRRERPTFQMYWCFQCNRMVRIAVDNNPSEVTCPRCFGQFICEVNVPRPRLVVDFTTPDPSPEARLLEALSLMMEPPIRRFPGLLQSQPEEVPVHHRRRRFRRRQPEPEPVPEPAHHRPRTWIVFQPMDQPNPFLPINNIPNGPGPGQFPFPLPRTVDTRDYFMGPGLNELIEQITENDRQGPAPAPERAIDAIPTVKIASAHLKENSQCPVCQEEFEVGGEARELACKHIYHSDCIVPWLRLHNSCPVCRHEVSVPTSSSEDECVDVSGDEGRLRRCLRWTRRFTSVWPFNSRIFCI* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g00837 312 ProSiteProfiles Zinc finger RING-type profile. 224 265 IPR001841 -
Phac9g00837 312 Pfam zinc-ribbon 23 57 IPR039525 GO:0061630
Phac9g00837 312 FunFam E3 ubiquitin-protein ligase RING1-like 187 271 - -
Phac9g00837 312 MobiDBLite consensus disorder prediction 104 131 - -
Phac9g00837 312 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 118 268 - -
Phac9g00837 312 Pfam Ring finger domain 223 265 IPR001841 -
Phac9g00837 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 271 IPR013083 -
Phac9g00837 312 SMART ring_2 224 264 IPR001841 -
Phac9g00837 312 SUPERFAMILY RING/U-box 204 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g00837 Phac-Chr9 6250696 6253517 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g00837 196 309 C3H Transcription Factor Family AT1G68180 45.217 5.61e-26 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g00837 K11982 - gmx:100787399 401.364