LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac9g00817	ATGGATGGGAAGCCTAACCCGGATTCCTCCTCCGCGGACTTCCTCCGCCACGTTCAAGCCGCCTTGAAACGACACCGTCCCCTCGGTTCAATGCAGTCCAATAGCATAAGGCCAAGGCGCACGCTGCTTCCACAACGAAAGCTGTCAAACACGCCTTCCGACCCCACTAAATCTCAAGAACAAGCTTCTTCCAAGGTCTCACTCGACACCGTCGTCCCTTCCCAAAATCTAGATGCTCAGAAGAAAGTTCAGTTTTCAGTTCACACGAATTCTACTGCTCAGGATGCTAAGGCCACCACTGAGTTGGAGAATTTATCGTCTCACATGGGTTCGCTTGGATTCGCAGAAATGGAGTGGGTTGAAGGCAACCAAATTGAAGCATCGTCATCATTGCTTGGATGCAACCGGAAGGAGGATGTTCAGAAGGCTGGCTTCGACGCGAGTTTGAGATGTGATAGTGGAGTGAGTTCGGTGTTGCCAAAGAGAAGTGTGGTTACTCAGGATCATTTGCAGCAATTCAGTAGTTTTTTGAGTCAGCCAGCTACGCAGTCTTCGGTTTTGGGACCTTCATGTGCTACAACCACCTCAGTTCATTCAACTTCGGCACCTATGCTAAATTCAACAACACGCTATTCTCACTCGCATCTAGAAGGTGGCTCAAATGTGACTGCTGAGCCTTTTGGGGAGGTTAATGCTAACCCTCGTCCTGTAACTGAAGGGTTTGTGAAATCAGTTAATGTTTTCCAAAAGGAAACCAACAGAATGTTGGTGGATCGGGGGGCAGAAGCTGAAGTCCAAGCTTCTGGTCCTAGTATTGCTGATGCAGAGTTGGCGTCTAAGAAGAGCAATCGATCTAAGGAGCAACAAGGGAGTGTGTTGAAAGAATCTGGAGATTCTAATTATACATGGGATGATGGTAAAGGGAAAGAGGCTGTGGATGTTGCCACTATACAACCGTTGGCTCTACCTTCCTCAACCACATCTTCAGATGCGAAGTTGGAGTCTTCTAAGGTAGAAAAACGTGAGAAAATTGCAAGTAGTAAAGGTGCATCAGCTGCCCGTAAAAGGACTTATGATCCTGATTTGTTTTTCAAAGTTAATGGAAAGCTTTATCAACGTCTTGGCAAGATAGGTAGTGGTGGAAGCAGTGAGGTACACAAAGTGATTTCATCGGACTGTAGGATATATGCCCTTAAAAAGATCAAGCTCAAGGGTCGCGATTATGCTACTGCATTTGGGTTTTGTCAAGAGATTGAGTATCTGAATAGGCTAAAGGGAAAGGATAACATCATACAGCTCATAGATTATGAGGTGACAGACAAGGCATTGCTTGAGGAAGTTATGAAAGGCTCCTTCAGTAATAAAGATGGCCGGGTCAAGGATGATGGATGTATATACATGGTACTAGAATATGGAGAAATTGATTTGGCTCACATGTTGTCTCAGAAGTGGAAGGAACTGGATGGAAGCCACCAGACCATAGATGAGAACTGGCTTCGATTTTATTGGCAGCAAATTCTTCTAGCTGTCAACACTATTCATGAGGAACGTATTGTGCACTCAGACTTGAAGCCAGCTAACTTCCTTCTTGTCAAAGGTTCCCTAAAACTAATTGATTTTGGTATAGCCAAAGCAATAATGAGTGACACAACCAACATCCAACGGGATTCACAGGTGGGTACACTAAGTTACATGTCTCCAGAGGCATTTATGTGTAATGAGACTGATGCAAATGGAAACATCATAAAGTGTGGCCGGTCATCAGATATCTGGTCCCTGGGCTGCATCCTTTATCAAATGGTATATGGGAGAACACCTTTTTCTGATTACAAGACATTTTGGGCCAAATTCAAAGTGATAACAGATCCAAATCATGAAATTACGTATGAACCAGTTTCAAATCCATGGCTTTTGGATCTTATGGAGAGGTGTCTAACATGGGATCGCAATCAAAGGTGGAGAATACCTCAGCTACTCCAACATCCTTTTCTTGTTCCTCCTGTACCATCTCATCCATCATTGCCCCAGGATAATAATAATTGTGAATTGCTACAACATATTTCTGAAACTTGTACATATGACCCAGAGGTATCTCAACTGTGTAGTCAGCTCCAACGGCTTCTTAGCGATCCAGTCGATAAAACAACTCACTCACTATATTCACGAGATCAACAACTAAAACTGCTGTCCCAAATGTCAGATCTATGTATTCAGCTGCATGAACGATTGAGAAATACTGGAAGCAAGTAG	2250	0.4396	MDGKPNPDSSSADFLRHVQAALKRHRPLGSMQSNSIRPRRTLLPQRKLSNTPSDPTKSQEQASSKVSLDTVVPSQNLDAQKKVQFSVHTNSTAQDAKATTELENLSSHMGSLGFAEMEWVEGNQIEASSSLLGCNRKEDVQKAGFDASLRCDSGVSSVLPKRSVVTQDHLQQFSSFLSQPATQSSVLGPSCATTTSVHSTSAPMLNSTTRYSHSHLEGGSNVTAEPFGEVNANPRPVTEGFVKSVNVFQKETNRMLVDRGAEAEVQASGPSIADAELASKKSNRSKEQQGSVLKESGDSNYTWDDGKGKEAVDVATIQPLALPSSTTSSDAKLESSKVEKREKIASSKGASAARKRTYDPDLFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCRIYALKKIKLKGRDYATAFGFCQEIEYLNRLKGKDNIIQLIDYEVTDKALLEEVMKGSFSNKDGRVKDDGCIYMVLEYGEIDLAHMLSQKWKELDGSHQTIDENWLRFYWQQILLAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRDSQVGTLSYMSPEAFMCNETDANGNIIKCGRSSDIWSLGCILYQMVYGRTPFSDYKTFWAKFKVITDPNHEITYEPVSNPWLLDLMERCLTWDRNQRWRIPQLLQHPFLVPPVPSHPSLPQDNNNCELLQHISETCTYDPEVSQLCSQLQRLLSDPVDKTTHSLYSRDQQLKLLSQMSDLCIQLHERLRNTGSK*	750

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac9g00817	749	MobiDBLite	consensus disorder prediction	323	351	-	-
	Phac9g00817	749	MobiDBLite	consensus disorder prediction	275	305	-	-
	Phac9g00817	749	MobiDBLite	consensus disorder prediction	24	68	-	-
	Phac9g00817	749	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	518	530	IPR008271	GO:0004672\|GO:0006468
	Phac9g00817	749	Pfam	Protein kinase domain	371	664	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac9g00817	749	Gene3D	Phosphorylase Kinase; domain 1	364	450	-	-
	Phac9g00817	749	MobiDBLite	consensus disorder prediction	284	298	-	-
	Phac9g00817	749	MobiDBLite	consensus disorder prediction	333	351	-	-
	Phac9g00817	749	ProSiteProfiles	Protein kinase domain profile.	371	664	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac9g00817	749	PANTHER	MIXED LINEAGE PROTEIN KINASE	34	697	-	-
	Phac9g00817	749	SMART	serkin_6	371	664	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac9g00817	749	SUPERFAMILY	Protein kinase-like (PK-like)	365	673	IPR011009	-
	Phac9g00817	749	FunFam	serine/threonine-protein kinase mph1 isoform X2	364	451	-	-
	Phac9g00817	749	MobiDBLite	consensus disorder prediction	28	68	-	-
	Phac9g00817	749	FunFam	serine/threonine-protein kinase mph1 isoform X1	483	667	-	-
	Phac9g00817	749	Gene3D	Transferase(Phosphotransferase) domain 1	485	666	-	-
	Phac9g00817	749	ProSitePatterns	Protein kinases ATP-binding region signature.	377	399	IPR017441	GO:0005524
	Phac9g00817	749	CDD	PKc_Mps1	369	664	IPR027084	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac9g00817	Phac-Chr9	6047988	6051873	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac9g00817	377	665	MAP Kinase Kinase Kinase	AT4G08470	29.766	9.72e-24	103

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TTK	Phac9g00817		Pkinase	4e-55	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac9g00817	K08866		-	gmx:100788990	1231.08