LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac9g00816	ATGGATGGGAAGCCTAACCCGGATTCCTCCTCCGCGGACTTCCTCCGCCACGTTCAAGCCGCCTTGAAACGACACCGTCCCCTCGGTTCAATGCAGTCCAATAGCATAAGGCCAAGGCGCACGCTGCTTCCACAACGAAAGCTGTCAAACACGCCTTCCGACCCCACTAAATCTCAAGAACAAGCTTCTTCCAAGGTCTCACTCGACACCGTCGTCCCTTCCCAAAATCTAGATGCTCAGAAGAAAGTTCAGTTTTCAGTTCACACGAATTCTACTGCTCAGGAAATGGAGTGGGTTGAAGGCAACCAAATTGAAGCATCGTCATCATTGCTTGGATGCAACCGGAAGGAGGATGTTCAGAAGGCTGGCTTCGACGCGAGTTTGAGATGTGATAGTGGAGTGAGTTCGGTGTTGCCAAAGAGAAGTGTGGTTACTCAGGATCATTTGCAGCAATTCAGTAGTTTTTTGAGTCAGCCAGCTACGCAGTCTTCGGTTTTGGGACCTTCATGTGCTACAACCACCTCAGTTCATTCAACTTCGGCACCTATGCTAAATTCAACAACACGCTATTCTCACTCGCATCTAGAAGGTGGCTCAAATGTGACTGCTGAGCCTTTTGGGGAGGTTAATGCTAACCCTCGTCCTGTAACTGAAGGGTTTGTGAAATCAGTTAATGTTTTCCAAAAGGAAACCAACAGAATGTTGGTGGATCGGGGGGCAGAAGCTGAAGTCCAAGCTTCTGGTCCTAGTATTGCTGATGCAGAGTTGGCGTCTAAGAAGAGCAATCGATCTAAGGAGCAACAAGGGAGTGTGTTGAAAGAATCTGGAGATTCTAATTATACATGGGATGATGGTAAAGGGAAAGAGGCTGTGGATGTTGCCACTATACAACCGTTGGCTCTACCTTCCTCAACCACATCTTCAGATGCGAAGTTGGAGTCTTCTAAGGTAGAAAAACGTGAGAAAATTGCAAGTAGTAAAGGTGCATCAGCTGCCCGTAAAAGGACTTATGATCCTGATTTGTTTTTCAAAGTTAATGGAAAGCTTTATCAACGTCTTGGCAAGATAGGTAGTGGTGGAAGCAGTGAGGTACACAAAGTGATTTCATCGGACTGTAGGATATATGCCCTTAAAAAGATCAAGCTCAAGGGTCGCGATTATGCTACTGCATTTGGGTTTTGTCAAGAGATTGAGTATCTGAATAGGCTAAAGGGAAAGGATAACATCATACAGCTCATAGATTATGAGGTGACAGACAAGGCATTGCTTGAGGAAGTTATGAAAGGCTCCTTCAGTAATAAAGATGGCCGGGTCAAGGATGATGGATGTATATACATGGTACTAGAATATGGAGAAATTGATTTGGCTCACATGTTGTCTCAGAAGTGGAAGGAACTGGATGGAAGCCACCAGACCATAGATGAGAACTGGCTTCGATTTTATTGGCAGCAAATTCTTCTAGCTGTCAACACTATTCATGAGGAACGTATTGTGCACTCAGACTTGAAGCCAGCTAACTTCCTTCTTGTCAAAGGTTCCCTAAAACTAATTGATTTTGGTATAGCCAAAGCAATAATGAGTGACACAACCAACATCCAACGGGATTCACAGGTGGGTACACTAAGTTACATGTCTCCAGAGGCATTTATGTGTAATGAGACTGATGCAAATGGAAACATCATAAAGTGTGGCCGGTCATCAGATATCTGGTCCCTGGGCTGCATCCTTTATCAAATGGTATATGGGAGAACACCTTTTTCTGATTACAAGACATTTTGGGCCAAATTCAAAGTGATAACAGATCCAAATCATGAAATTACGTATGAACCAGTTTCAAATCCATGGCTTTTGGATCTTATGGAGAGGTGTCTAACATGGGATCGCAATCAAAGGTGGAGAATACCTCAGCTACTCCAACATCCTTTTCTTGTTCCTCCTGTACCATCTCATCCATCATTGCCCCAGGATAATAATAATTGTGAATTGCTACAACATATTTCTGAAACTTGTACATATGACCCAGAGGTATCTCAACTGTGTAGTCAGCTCCAACGGCTTCTTAGCGATCCAGTCGATAAAACAACTCACTCACTATATTCACGAGATCAACAACTAAAACTGCTGTCCCAAATGTCAGATCTATGTATTCAGCTGCATGAACGATTGAGAAATACTGGAAGCAAGTAG	2187	0.438	MDGKPNPDSSSADFLRHVQAALKRHRPLGSMQSNSIRPRRTLLPQRKLSNTPSDPTKSQEQASSKVSLDTVVPSQNLDAQKKVQFSVHTNSTAQEMEWVEGNQIEASSSLLGCNRKEDVQKAGFDASLRCDSGVSSVLPKRSVVTQDHLQQFSSFLSQPATQSSVLGPSCATTTSVHSTSAPMLNSTTRYSHSHLEGGSNVTAEPFGEVNANPRPVTEGFVKSVNVFQKETNRMLVDRGAEAEVQASGPSIADAELASKKSNRSKEQQGSVLKESGDSNYTWDDGKGKEAVDVATIQPLALPSSTTSSDAKLESSKVEKREKIASSKGASAARKRTYDPDLFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCRIYALKKIKLKGRDYATAFGFCQEIEYLNRLKGKDNIIQLIDYEVTDKALLEEVMKGSFSNKDGRVKDDGCIYMVLEYGEIDLAHMLSQKWKELDGSHQTIDENWLRFYWQQILLAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRDSQVGTLSYMSPEAFMCNETDANGNIIKCGRSSDIWSLGCILYQMVYGRTPFSDYKTFWAKFKVITDPNHEITYEPVSNPWLLDLMERCLTWDRNQRWRIPQLLQHPFLVPPVPSHPSLPQDNNNCELLQHISETCTYDPEVSQLCSQLQRLLSDPVDKTTHSLYSRDQQLKLLSQMSDLCIQLHERLRNTGSK*	729

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac9g00816	728	FunFam	serine/threonine-protein kinase mph1 isoform X1	464	646	-	-
	Phac9g00816	728	MobiDBLite	consensus disorder prediction	24	68	-	-
	Phac9g00816	728	ProSitePatterns	Protein kinases ATP-binding region signature.	356	378	IPR017441	GO:0005524
	Phac9g00816	728	CDD	PKc_Mps1	348	643	IPR027084	-
	Phac9g00816	728	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	497	509	IPR008271	GO:0004672\|GO:0006468
	Phac9g00816	728	FunFam	serine/threonine-protein kinase mph1 isoform X2	343	430	-	-
	Phac9g00816	728	Pfam	Protein kinase domain	350	643	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac9g00816	728	MobiDBLite	consensus disorder prediction	254	284	-	-
	Phac9g00816	728	SMART	serkin_6	350	643	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac9g00816	728	MobiDBLite	consensus disorder prediction	302	330	-	-
	Phac9g00816	728	Gene3D	Transferase(Phosphotransferase) domain 1	464	645	-	-
	Phac9g00816	728	ProSiteProfiles	Protein kinase domain profile.	350	643	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac9g00816	728	SUPERFAMILY	Protein kinase-like (PK-like)	344	652	IPR011009	-
	Phac9g00816	728	Gene3D	Phosphorylase Kinase; domain 1	343	429	-	-
	Phac9g00816	728	PANTHER	MIXED LINEAGE PROTEIN KINASE	36	676	-	-
	Phac9g00816	728	MobiDBLite	consensus disorder prediction	28	68	-	-
	Phac9g00816	728	MobiDBLite	consensus disorder prediction	312	330	-	-
	Phac9g00816	728	MobiDBLite	consensus disorder prediction	263	277	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac9g00816	Phac-Chr9	6047988	6051873	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac9g00816	356	644	MAP Kinase Kinase Kinase	AT4G08470	29.766	7.15e-24	103

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TTK	Phac9g00816		Pkinase	3.7e-55	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac9g00816	K08866		-	gmx:100788990	1189.48